View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14540_low_8 (Length: 242)
Name: NF14540_low_8
Description: NF14540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14540_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 4261282 - 4261468
Alignment:
| Q |
9 |
acatcatcaatcagcatatcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctact |
108 |
Q |
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| T |
4261282 |
acatcagcaatcagcatatcagcagtaaatgagaacagttgaatgagtcaatctgcacaaatgaccaaataaaaaagcatatgatcttttatgatctact |
4261381 |
T |
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| Q |
109 |
cttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaagacaatactttatatctgttattagtaaaaacaac |
195 |
Q |
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| T |
4261382 |
cttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaagacaatactttatatctgttattagtaaaaacaac |
4261468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 4037940 - 4037825
Alignment:
| Q |
85 |
gcatatgatcttttatgatctactcttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaag--acaatactttatatctgttat |
182 |
Q |
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| T |
4037940 |
gcatatgatcttttatgatctactcatattctattattgcttgttattttgtcaaaggtaccaaaggagatgttaagacacaatactatatatctgttat |
4037841 |
T |
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| Q |
183 |
tagtaaaaacaacaag |
198 |
Q |
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| T |
4037840 |
tggtaaagacaacaag |
4037825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 4027602 - 4027537
Alignment:
| Q |
95 |
ttttatgatctactcttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaa |
160 |
Q |
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| T |
4027602 |
ttttatgaactactcttattctatttttgtctgtcattttgtccaaggcatcaaagtagatgttaa |
4027537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 4268221 - 4268263
Alignment:
| Q |
108 |
tcttattctattcttctttgtcatttggtccaaggcatcaaaa |
150 |
Q |
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| T |
4268221 |
tcttattctattcttgtttgtcatttgatccaaggcatcaaaa |
4268263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 4261478 - 4261511
Alignment:
| Q |
191 |
acaacaagaatggcctaaacctatgggctattag |
224 |
Q |
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| T |
4261478 |
acaacaagaatggcctaaacctatgggctattag |
4261511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 4027516 - 4027480
Alignment:
| Q |
188 |
aaaacaacaagaatggcctaaacctatgggctattag |
224 |
Q |
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| T |
4027516 |
aaaacaacaaaaatggcctaaacctatgggctattag |
4027480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 4268308 - 4268344
Alignment:
| Q |
188 |
aaaacaacaagaatggcctaaacctatgggctattag |
224 |
Q |
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| T |
4268308 |
aaaacaacaagaatggcttaaaactatgggctattag |
4268344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 24052829 - 24052702
Alignment:
| Q |
22 |
gcatatcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctactcttattctattct |
121 |
Q |
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| T |
24052829 |
gcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaatagaaatgcatatgatcttttatgatctactcttattctaatct |
24052730 |
T |
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| Q |
122 |
tctttgtcatttggtccaaggcatcaaa |
149 |
Q |
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| T |
24052729 |
tgtttgacatttggtccaaggcatcaaa |
24052702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 24049693 - 24049566
Alignment:
| Q |
22 |
gcatatcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctactcttattctattct |
121 |
Q |
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| T |
24049693 |
gcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaatagaaatgcatatgatcttttatgatctactcttattctaatct |
24049594 |
T |
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| Q |
122 |
tctttgtcatttggtccaaggcatcaaa |
149 |
Q |
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| T |
24049593 |
tgtttgatatttggtccaaggcatcaaa |
24049566 |
T |
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