View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_high_17 (Length: 282)
Name: NF14541_high_17
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 18671831 - 18671573
Alignment:
| Q |
8 |
atactacttgaggaaaatacgagcatcatgctgttcttacatgcaccattatctaaagttttaagttgttcttacatgcatcttgctgttccatcaccga |
107 |
Q |
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| T |
18671831 |
atactacttgaggaaaatacgagcatcatgctgttcttacatgcaccattatctaaagttttaagtggttcttacatgcatcttgcggttccatcaccga |
18671732 |
T |
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| Q |
108 |
tgtgggttaaggtagacatgtttaaattgaagctatatatggaaaataacaatgtggtcggagttcatttgattctcaaagaaataatccattagattga |
207 |
Q |
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| T |
18671731 |
tgtgggttaaggtagacatgtttaaattgaagctatatatggaaaataacaatgtggttggagttcatttgattctcaaagaaataatccattagattga |
18671632 |
T |
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| Q |
208 |
aagatgttgtaattagagaatggcatttgagaaagattgaaagagattgatgtcctatg |
266 |
Q |
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| T |
18671631 |
aagatgttgtaattagagaatggcatttgagaaagattgaaagagattgatgtcctatg |
18671573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 13111348 - 13111606
Alignment:
| Q |
8 |
atactacttgaggaaaatacgagcatcatgctgttcttacatgcaccattatctaaagttttaagttgttcttacatgcatcttgctgttccatcaccga |
107 |
Q |
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| T |
13111348 |
atactacttgaggaaaatacgagcatcatgctgttcttacatgcaccattatctaaagttttaagttgttcttacatgcatcttgctgttccatcaccca |
13111447 |
T |
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| Q |
108 |
tgtgggttaaggtagacatgtttaaattgaagctatatatggaaaataacaatgtggtcggagttcatttgattctcaaagaaataatccattagattga |
207 |
Q |
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| T |
13111448 |
tgtgggttaaggtagacatgtttgaattcaagctatatttggaaaataacaatgtggttggagttcatttgattctcaaagaaataatccattagattga |
13111547 |
T |
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| Q |
208 |
aagatgttgtaattagagaatggcatttgagaaagattgaaagagattgatgtcctatg |
266 |
Q |
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| T |
13111548 |
aagatgttgtaattagagaatggcatttgagaaagattgaaagagattgatgtcctatg |
13111606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 13004912 - 13004850
Alignment:
| Q |
149 |
gaaaataacaatgtggtcggagttcatttgattctcaaagaaataatccattagattgaaaga |
211 |
Q |
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| T |
13004912 |
gaaaataacaatgtggttggagttcatttgattctcatagaaatcatccattagattgaaaga |
13004850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 13006136 - 13006076
Alignment:
| Q |
191 |
ataatccattagattgaaagatgttgtaattagagaatggcatttgagaaagattgaaagagat |
254 |
Q |
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| T |
13006136 |
ataatccattagtttgaaagatgtggt--ttagagagtggcattt-agaaagactgaaagagat |
13006076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 13121250 - 13121311
Alignment:
| Q |
191 |
ataatccattagattgaaagatgttgtaattagagaatggcatttgagaaagattgaaagagat |
254 |
Q |
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| T |
13121250 |
ataacccatttgattgaaatatgtcgt--ttagagaatggcaattgagaaagactgaaagagat |
13121311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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