View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_high_18 (Length: 217)
Name: NF14541_high_18
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 20141507 - 20141296
Alignment:
| Q |
1 |
cgtttgctccacaaccctccaatcattatcaatctaccagaagagcctaaccatcaacttacagacaagggctgtctctttgttgttggttcctgcaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20141507 |
cgtttgctccacaaccctccaatcattatcaatctaccagaagatcctaaccatcaacttgcagacaagggctgtctctttgttgttggttcctgcaatg |
20141408 |
T |
|
| Q |
101 |
gattactttgtttgttcagtcagtttttcacctctgattttaatagtgtgacgttgcttcgtttttggaacccagccacgaggaaattgtctccaaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20141407 |
gattactttgtttgttcagtcagtttttcacctctgattttaatagtgtgacgttgcttcgtttttggaacccagccacgaggaaaatgtctccaaaatt |
20141308 |
T |
|
| Q |
201 |
agggtattgtct |
212 |
Q |
| |
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|||||||||||| |
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|
| T |
20141307 |
agggtattgtct |
20141296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 20134005 - 20133799
Alignment:
| Q |
1 |
cgtttgctccacaaccctccaatcattatcaatctaccagaagagcctaaccatcaacttacagacaagggctgtctctttgttgttggttcctgcaatg |
100 |
Q |
| |
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||||||||||| |||||||||||||| | |||||| |||||||| ||||||||||||||||| |||||| ||||| | |||||||||||| ||||||| |
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| T |
20134005 |
cgtttgctccagaaccctccaatcat-accaatcttccagaagatcctaaccatcaacttacgaacaaggactgtcattatgttgttggttcatgcaatg |
20133907 |
T |
|
| Q |
101 |
gattactttgtttgttcagtcagtttttcacctctgattttaatagtgtgacgttgcttcgtttttggaacccagccacgaggaaattgtctccaaaatt |
200 |
Q |
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||||||| || |||||| |||| ||||||| ||| ||||||||||||| || || ||||| || ||||||||||||||||||||| | || |||||||| |
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| T |
20133906 |
gattactctgcttgttctgtcaatttttcaactccaattttaatagtgtaacatttcttcgcttctggaacccagccacgaggaaaatatcaccaaaatt |
20133807 |
T |
|
| Q |
201 |
agggtatt |
208 |
Q |
| |
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|||||||| |
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|
| T |
20133806 |
agggtatt |
20133799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 20338308 - 20338509
Alignment:
| Q |
1 |
cgtttgctccacaaccctccaatcattatcaatctaccagaagagcctaaccatcaacttacagacaagggctgtctctttgttgttggttcctgcaatg |
100 |
Q |
| |
|
||||||||| | || ||||||||||||||| |||| |||||||| ||| |||| |||||||||| || | | |||| ||| |||||||||| ||||| |
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| T |
20338308 |
cgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccacaaacttacaga---ggacagcctctatgtcgttggttcctacaatg |
20338404 |
T |
|
| Q |
101 |
gattactttgtttgttcagtcagtttttcacctctgattttaatagtgtgacgttgcttcgtttttggaacccagccacgaggaaattgtctccaaaatt |
200 |
Q |
| |
|
||||||| || |||| |||||||||||||| || ||| |||||||||||| | |||||||||||||||||| ||||| |||||| | ||| ||||||| |
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|
| T |
20338405 |
gattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtttttggaaccctgccacaaggaaaatatctgcaaaatt |
20338504 |
T |
|
| Q |
201 |
agggt |
205 |
Q |
| |
|
||||| |
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|
| T |
20338505 |
agggt |
20338509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 179
Target Start/End: Complemental strand, 20126821 - 20126649
Alignment:
| Q |
7 |
ctccacaaccctccaatcattatcaatctaccagaagagcctaaccatcaacttacagacaagggctgtctctttgttgttggttcctgcaatggattac |
106 |
Q |
| |
|
||||| ||||||||| ||||| ||||||| ||| | || || || |||||||| || |||||| ||| || |||||||||||||||||||||||||||| |
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|
| T |
20126821 |
ctccagaaccctccattcattttcaatcttccaaaggatccatactatcaacttgcaaacaaggactgcctgtttgttgttggttcctgcaatggattac |
20126722 |
T |
|
| Q |
107 |
tttgtttgttcagtcagtttttcacctctgattttaatagtgtgacgttgcttcgtttttggaacccagccac |
179 |
Q |
| |
|
| || ||||| || || |||||||||| ||||||||||||| |||| ||||||||||||||| |||||||| |
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|
| T |
20126721 |
tctgcttgtttggttaggttttcacctccaattttaatagtgttacgtggcttcgtttttggaatccagccac |
20126649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 22063014 - 22063123
Alignment:
| Q |
1 |
cgtttgctccacaaccctccaatcattatcaatctaccagaagagcctaaccatcaacttacagacaagggctgtctctttgttgttggttcctgcaatg |
100 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| ||| || | ||| |||||||||| | ||||||| || | || | |||||||||||||||| |
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| T |
22063014 |
cgtttgctcgagaaccctccaatcattatcaatcttccaaaaaatccttaccatcaactgaatgacaaggattgccactacatcgttggttcctgcaatg |
22063113 |
T |
|
| Q |
101 |
gattactttg |
110 |
Q |
| |
|
|||| ||||| |
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|
| T |
22063114 |
gattgctttg |
22063123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 11971646 - 11971589
Alignment:
| Q |
53 |
atcaacttacagacaagggctgtctctttgttgttggttcctgcaatggattactttg |
110 |
Q |
| |
|
||||||||| |||||||||||| ||| | |||||||||| ||||||||||| ||||| |
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|
| T |
11971646 |
atcaacttaaagacaagggctgcctcggtattgttggttcgtgcaatggattgctttg |
11971589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 15960591 - 15960700
Alignment:
| Q |
1 |
cgtttgctccacaaccctccaatcattatcaatctaccagaagagcctaaccatcaacttacagacaagggctgtctctttgttgttggttcctgcaatg |
100 |
Q |
| |
|
||||||||| | ||||||||||||||| | ||||| || |||| ||| | ||||| ||| |||||||| ||| ||| | |||||||||| ||||||| |
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| T |
15960591 |
cgtttgctcgaaaaccctccaatcatttttaatcttcccaaagatccttattatcaatttaaagacaaggattgtgtctatattgttggttcttgcaatg |
15960690 |
T |
|
| Q |
101 |
gattactttg |
110 |
Q |
| |
|
|||| ||||| |
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|
| T |
15960691 |
gattgctttg |
15960700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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