View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_high_2 (Length: 600)
Name: NF14541_high_2
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 3 - 539
Target Start/End: Complemental strand, 25974615 - 25974064
Alignment:
| Q |
3 |
tcgaagaatatagcatttctcgcttttatgatcttgtgggaagacgatgtattgacaaagttactttaatagcctttcgttcaaattattgcgtcccaaa |
102 |
Q |
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| T |
25974615 |
tcgaagaatatagcatttctcgcttttatgatcttgtgggaagacgatgtattgacaaagttactttaatagccttacgttcagattattgtgtcccaaa |
25974516 |
T |
|
| Q |
103 |
atttgtttgaagttgtttttatgaatggtttgacgatggaggaacctttgttggttatcttcctcaaggcgtgaaaatcccatcgtgagttagaattata |
202 |
Q |
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| T |
25974515 |
atttgttcgaagttgtttttatgaatggtttgatggtggaggaacctttattggttatcttccccaaggcgtgaaaatcccatcgcgagttagaattctg |
25974416 |
T |
|
| Q |
203 |
cctaaca--------gtgatggagttgttggatactttctaccctgtggtataggtttaatctgtctaacttatttgagcagattaaaatagcatgaggg |
294 |
Q |
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| T |
25974415 |
cctaacattctaacagtgatggagttattggatattttctaccccgtggtgcaggtttaatctgtctaacttatttgtggagattaaattagcatgaggg |
25974316 |
T |
|
| Q |
295 |
tttgtctctattgttttgannnnnnnnatgttcggtggttgatcttattgttgtaagttatcattctcgat----gaggtttaaaacttgatccatttca |
390 |
Q |
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| T |
25974315 |
tttttctctattgttttgattttttt-atgtccggtggttgatcttattgtggtaagttatcattctcgatcgatgaggtttaaaacttgatccatttca |
25974217 |
T |
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| Q |
391 |
aaatggaaaggttttacctaatttttt----atgctcaaaggtggaacgtgttgttgtaagctctcttcctcgatgaggcttaaaatgtatcagttgtgg |
486 |
Q |
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| T |
25974216 |
aaatggaaaggttttacctaattttttttttatactcaaaggtggaacttgttgtggtaagctctcttcctcgatgaggcttaaaatgtatcagttgtgg |
25974117 |
T |
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| Q |
487 |
gatgaatttttacctatgttattgtaagtgacgattctatcaactaagcgcat |
539 |
Q |
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| T |
25974116 |
gatgaatttttacctatgttattgtaagtgacgattgtatcaactaagcgcat |
25974064 |
T |
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