View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14541_high_3 (Length: 502)

Name: NF14541_high_3
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14541_high_3
NF14541_high_3
[»] chr6 (11 HSPs)
chr6 (255-487)||(4045698-4045930)
chr6 (16-169)||(4046015-4046168)
chr6 (46-169)||(4125076-4125201)
chr6 (29-163)||(4105576-4105711)
chr6 (258-369)||(4116180-4116292)
chr6 (258-369)||(4130244-4130356)
chr6 (15-169)||(4054484-4054638)
chr6 (15-169)||(17404424-17404578)
chr6 (258-377)||(4054242-4054361)
chr6 (257-377)||(17404696-17404816)
chr6 (16-60)||(4105470-4105515)
[»] scaffold1770 (1 HSPs)
scaffold1770 (258-369)||(979-1091)
[»] chr3 (5 HSPs)
chr3 (13-169)||(45865729-45865885)
chr3 (412-487)||(27305521-27305595)
chr3 (412-454)||(30614024-30614066)
chr3 (407-443)||(4160056-4160092)
chr3 (451-487)||(7764755-7764791)
[»] chr4 (5 HSPs)
chr4 (407-483)||(5350195-5350271)
chr4 (410-487)||(52467157-52467236)
chr4 (407-489)||(5280593-5280674)
chr4 (407-487)||(18912564-18912645)
chr4 (407-443)||(12743725-12743761)
[»] chr2 (5 HSPs)
chr2 (412-484)||(41446426-41446498)
chr2 (412-457)||(29989444-29989489)
chr2 (412-487)||(2838235-2838311)
chr2 (412-487)||(12123395-12123470)
chr2 (407-443)||(11690823-11690859)
[»] chr1 (3 HSPs)
chr1 (405-487)||(15820586-15820666)
chr1 (412-489)||(1050333-1050410)
chr1 (406-443)||(37559660-37559697)
[»] chr8 (3 HSPs)
chr8 (412-487)||(3231648-3231724)
chr8 (412-487)||(8154070-8154145)
chr8 (412-487)||(32901991-32902066)
[»] chr7 (4 HSPs)
chr7 (413-487)||(23564874-23564947)
chr7 (424-487)||(4253349-4253413)
chr7 (407-443)||(6430463-6430499)
chr7 (412-487)||(31105202-31105278)
[»] chr5 (2 HSPs)
chr5 (412-486)||(9299851-9299925)
chr5 (407-443)||(534094-534130)
[»] scaffold0219 (1 HSPs)
scaffold0219 (407-483)||(27247-27322)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 255 - 487
Target Start/End: Complemental strand, 4045930 - 4045698
Alignment:
Q  255 cacaggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgcggtactcttccttttga 354  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||    
T  4045930 cacaggttatctctgggaagttatatgatggatccaaggtagatatttggaattgtggtacgttactgtatgcacttctatgcggtgctcttccttttga 4045831  T
Q  355 tgatgaaaatattcccaccctctacnnnnnnntaaaggtacacattgatgataattattgtgaattcggactcaaaactcacactaataatcttatatgt 454  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  4045830 tgatgaaaatattcccaccctctacaaaaaaataaaggtacacattgatgataattattgtgaatttggactcaaaattcacaccaataatcttatatgt 4045731  T
Q  455 gtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    |||||||||||||||||||||||||||||||||    
T  4045730 gtgaagttaaagaaagtagtaaccaatatcaaa 4045698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 4046168 - 4046015
Alignment:
Q  16 aatatggtggctcatagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaac 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4046168 aatatggtggctcatagagacttaaagcctgaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaac 4046069  T
Q  116 atggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgagg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4046068 atggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgagg 4046015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 4125076 - 4125201
Alignment:
Q  46 gaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagatgtggaa 145  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4125076 gaaactatacttttggactcaaaatttaatgtcaagattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagttgtggaa 4125175  T
Q  146 gtct--taactatgcagctcctgagg 169  Q
    ||||  |||||||| |||||||||||    
T  4125176 gtcttataactatgaagctcctgagg 4125201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 4105576 - 4105711
Alignment:
Q  29 atagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagttact 128  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||| || ||||||    
T  4105576 atagagacttaaagtcggaaactatacttttggactcaaaattcaatgtcaagattactaattttggctttagcaacacaatgcagcatgatcggttact 4105675  T
Q  129 taagac-aagatgtggaagtcttaactatgcagctc 163  Q
    |||||| ||| |||| ||||||||||||||||||||    
T  4105676 taagacaaagttgtgaaagtcttaactatgcagctc 4105711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 369
Target Start/End: Original strand, 4116180 - 4116292
Alignment:
Q  258 aggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgc-ggtactcttccttttgatg 356  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||||||||||| ||| |||| |||| |||||||| | |||||| ||||||||||||    
T  4116180 aggttatctctgggaagttatatgatggatcaaaaatagatatttggaattgtggtacgatactctatgcacttctattcgggtactattccttttgatg 4116279  T
Q  357 atgaaaatattcc 369  Q
    |||||||||||||    
T  4116280 atgaaaatattcc 4116292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 369
Target Start/End: Original strand, 4130244 - 4130356
Alignment:
Q  258 aggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgc-ggtactcttccttttgatg 356  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||||||||||| ||| |||| |||| |||||||| | |||||| ||||||||||||    
T  4130244 aggttatctctgggaagttatatgatggatcaaaaatagatatttggaattgtggtacgatactctatgcacttctattcgggtactattccttttgatg 4130343  T
Q  357 atgaaaatattcc 369  Q
    |||||||||||||    
T  4130344 atgaaaatattcc 4130356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 4054638 - 4054484
Alignment:
Q  15 gaatatggtggctcatagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaa 114  Q
    ||||||||| | |||||||||||| ||||| || | | ||||||||||||||||||  | | |||||||| ||||||||||| |||||||||  ||||      
T  4054638 gaatatggtagttcatagagacttgaagcctgagaatttacttttggactcaaaatggagtgtcaagattgctgattttggcctgagcaacatcatgcgt 4054539  T
Q  115 catggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgagg 169  Q
     |||| || || ||||||||||| |||||||| | ||||||||||||||| ||||    
T  4054538 gatggccactttcttaagacaagttgtggaagccctaactatgcagctcccgagg 4054484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 17404424 - 17404578
Alignment:
Q  15 gaatatggtggctcatagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaa 114  Q
    ||||||||| | |||||||||| | || || |||| | ||||||||||||||||||  | | |||||||| ||||||||||| |||||||||  ||||      
T  17404424 gaatatggtagttcatagagacctgaaacccgaaaatttacttttggactcaaaatggagtgtcaagattgctgattttggcctgagcaacatcatgcgt 17404523  T
Q  115 catggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgagg 169  Q
     ||||||| || ||||||||||| || ||||| |  |||||||||||||| ||||    
T  17404524 gatggtcactttcttaagacaagttgcggaagccccaactatgcagctccagagg 17404578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 377
Target Start/End: Complemental strand, 4054361 - 4054242
Alignment:
Q  258 aggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgcggtactcttccttttgatga 357  Q
    |||||||||||||||||||||||| |||| |  |||||||| ||||||  |||||     |  | |||| |||||| || || ||||| |||||||||||    
T  4054361 aggttatctctgggaaattatatgctggacctgaggtagatgtttggagctgtggtgtaattttatatgcacttctctgtggcactctaccttttgatga 4054262  T
Q  358 tgaaaatattcccaccctct 377  Q
    |||||||||||||| |||||    
T  4054261 tgaaaatattcccaacctct 4054242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 377
Target Start/End: Original strand, 17404696 - 17404816
Alignment:
Q  257 caggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgcggtactcttccttttgatg 356  Q
    ||||||||||||||||||||||||| |||| |  | |||||| ||||||  |||||     |  | |||| |||||| || || ||||||||||||||||    
T  17404696 caggttatctctgggaaattatatgctggacctgaagtagatgtttggagctgtggtgtaattttatatgcacttctctgtggcactcttccttttgatg 17404795  T
Q  357 atgaaaatattcccaccctct 377  Q
    |||||||||| |||| |||||    
T  17404796 atgaaaatatccccaacctct 17404816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 4105515 - 4105470
Alignment:
Q  16 aatatggtggctcatagagacttaaag-ccagaaactatacttttg 60  Q
    |||||||||||||||||| |||||||| || |||||||||||||||    
T  4105515 aatatggtggctcatagaaacttaaagcccggaaactatacttttg 4105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 369
Target Start/End: Original strand, 979 - 1091
Alignment:
Q  258 aggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgc-ggtactcttccttttgatg 356  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||||||||||| ||| |||| |||| |||||||| | |||||| ||||||||||||    
T  979 aggttatctctgggaagttatatgatggatcaaaaatagatatttggaattgtggtacgatactctatgcacttctattcgggtactattccttttgatg 1078  T
Q  357 atgaaaatattcc 369  Q
    |||||||||||||    
T  1079 atgaaaatattcc 1091  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 45865885 - 45865729
Alignment:
Q  13 aagaatatggtggctcatagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgc 112  Q
    |||| |||||| |||||||||||| | || || |||| |||||||||||||||||||   | | |||| ||| |||||||||||||||||| ||  ||||    
T  45865885 aagactatggtagctcatagagacctgaaacctgaaaatatacttttggactcaaaaaagagtgtcaaaattgctgattttggcttgagcagcaacatgc 45865786  T
Q  113 aacatggtcagttacttaagacaagatgtggaagtcttaactatgcagctcctgagg 169  Q
       ||||||| |||||||| ||||| |||||||| | ||||||||||||||| ||||    
T  45865785 gtgatggtcacttacttaatacaagttgtggaagccctaactatgcagctccagagg 45865729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 27305521 - 27305595
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    |||||||||||||||||||| |||||| ||||| ||   ||||||| ||  || ||||||||||||||||||||||    
T  27305521 ttgtgaattcggactcaaaa-tcacaccaataaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaa 27305595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 454
Target Start/End: Complemental strand, 30614066 - 30614024
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttatatgt 454  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||    
T  30614066 ttgtgaattcggactcaaatctcacacaaataaacttatatgt 30614024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 4160056 - 4160092
Alignment:
Q  407 aattattgtgaattcggactcaaaactcacactaata 443  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  4160056 aattgttgtgaattcggactcaaaactcacaccaata 4160092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 487
Target Start/End: Complemental strand, 7764791 - 7764755
Alignment:
Q  451 atgtgtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    ||||||||||| || ||||||||||||||||||||||    
T  7764791 atgtgtgaagtaaaggaaagtagtaaccaatatcaaa 7764755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 483
Target Start/End: Complemental strand, 5350271 - 5350195
Alignment:
Q  407 aattattgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaaccaatat 483  Q
    |||| ||||||||||||||||||| ||||||| ||||| ||||  |||||||||| || ||||||||||||||||||    
T  5350271 aattgttgtgaattcggactcaaatctcacaccaataaacttaggtgtgtgaagtaaaggaaagtagtaaccaatat 5350195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 487
Target Start/End: Original strand, 52467157 - 52467236
Alignment:
Q  410 tattgtgaattcggactcaaaactcacactaat--aatcttatatgtgtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    ||||||||||||||||||||||||||||| |||  || ||   ||||||||||  || |||||| |||||||||||||||    
T  52467157 tattgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtgaagcaaaggaaagtggtaaccaatatcaaa 52467236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 5280593 - 5280674
Alignment:
Q  407 aattattgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaaccaatatcaaaat 489  Q
    ||||||||||||||||  ||||||| |||| | |||||  ||| ||||||| ||| || | ||||||||||||||||||||||    
T  5280593 aattattgtgaattcgagctcaaaa-tcactccaataaatttagatgtgtggagtaaaggtaagtagtaaccaatatcaaaat 5280674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 487
Target Start/End: Complemental strand, 18912645 - 18912564
Alignment:
Q  407 aattattgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaaga-aagtagtaaccaatatcaaa 487  Q
    ||||||||||| ||| |||||||| ||||||||||||| |||| || |||| ||  || || ||||||||| ||||||||||    
T  18912645 aattattgtgagttcagactcaaatctcacactaataaacttagatatgtggagcaaatgagaagtagtaatcaatatcaaa 18912564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 12743725 - 12743761
Alignment:
Q  407 aattattgtgaattcggactcaaaactcacactaata 443  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  12743725 aattgttgtgaattcggactcaaaactcacaccaata 12743761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 484
Target Start/End: Complemental strand, 41446498 - 41446426
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaaccaatatc 484  Q
    |||||||||| |||||||||||||||  ||||| |||| ||||||| ||  ||||||||||||||||| ||||    
T  41446498 ttgtgaattcagactcaaaactcacaacaataaacttaaatgtgtggagcaaaagaaagtagtaaccagtatc 41446426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 29989444 - 29989489
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttatatgtgtg 457  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||||    
T  29989444 ttgtgaattcggactcaaatctcacactaataaacttagatgtgtg 29989489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 487
Target Start/End: Complemental strand, 2838311 - 2838235
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataat-cttatatgtgtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    |||||| ||||||| |||||||||||| |||||| |||  ||||||| ||| || |||||||||||||| |||||||    
T  2838311 ttgtgagttcggacacaaaactcacaccaataatactttgatgtgtggagtaaaggaaagtagtaaccactatcaaa 2838235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 12123395 - 12123470
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    ||||||||| |||||||||| | ||||  ||||  ||||||||||| ||  || ||||||||||||||||||||||    
T  12123395 ttgtgaatttggactcaaaaattacacctataaatttatatgtgtggagcaaaggaaagtagtaaccaatatcaaa 12123470  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 11690859 - 11690823
Alignment:
Q  407 aattattgtgaattcggactcaaaactcacactaata 443  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  11690859 aattgttgtgaattcggactcaaaactcacaccaata 11690823  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 487
Target Start/End: Complemental strand, 15820666 - 15820586
Alignment:
Q  405 ataattattgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    ||||| |||||||||||||||||||||||  ||| ||||| |||| ||||||| ||  || |||||||||||| |||||||||    
T  15820666 ataataattgtgaattcggactcaaaact--caccaataaacttagatgtgtggagcaaaggaaagtagtaactaatatcaaa 15820586  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 489
Target Start/End: Original strand, 1050333 - 1050410
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaag-aaagtagtaaccaatatcaaaat 489  Q
    ||||||||| | |||||||| |||||| ||||| || | |||| |||||| |||| |||||||||||||||||||||||    
T  1050333 ttgtgaatttgaactcaaaa-tcacaccaataaactaagatgtatgaagtaaaaggaaagtagtaaccaatatcaaaat 1050410  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 37559660 - 37559697
Alignment:
Q  406 taattattgtgaattcggactcaaaactcacactaata 443  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  37559660 taattgttgtgaattcggactcaaaactcacaccaata 37559697  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 3231648 - 3231724
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaa-gaaagtagtaaccaatatcaaa 487  Q
    |||||||||||||||| || ||||||| ||||| |||  ||||||| ||| ||| |||||||||||| |||||||||    
T  3231648 ttgtgaattcggactctaatctcacaccaataaacttggatgtgtggagtaaaatgaaagtagtaactaatatcaaa 3231724  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 487
Target Start/End: Complemental strand, 8154145 - 8154070
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttat-atgtgtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    |||||||||||| ||||||| ||||||||||||   ||| ||||||||||| || ||||||||||| ||||||||||    
T  8154145 ttgtgaattcgggctcaaaa-tcacactaataaaactatgatgtgtgaagtaaaggaaagtagtaatcaatatcaaa 8154070  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 32901991 - 32902066
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaaga-aagtagtaaccaatatcaaa 487  Q
    |||||||||||||||||||| ||| || ||||| |||| ||||||| ||  ||||| |||||||||| |||||||||    
T  32901991 ttgtgaattcggactcaaaa-tcagaccaataaacttagatgtgtggagcaaaagagaagtagtaactaatatcaaa 32902066  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 487
Target Start/End: Original strand, 23564874 - 23564947
Alignment:
Q  413 tgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    ||||||||| ||||||||| |||||||||||| | || ||||||| ||| ||  |||||||| ||||||||||||    
T  23564874 tgtgaattcagactcaaaa-tcacactaataaacatagatgtgtggagtgaagaaaagtagtgaccaatatcaaa 23564947  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 487
Target Start/End: Original strand, 4253349 - 4253413
Alignment:
Q  424 actcaaaa-ctcacactaataatcttatatgtgtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    |||||||| ||||||| ||||| |||| ||||||| ||  |||||||||| ||||||||||||||    
T  4253349 actcaaaatctcacaccaataaacttagatgtgtgtagcaaaagaaagtattaaccaatatcaaa 4253413  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 6430499 - 6430463
Alignment:
Q  407 aattattgtgaattcggactcaaaactcacactaata 443  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  6430499 aattgttgtgaattcggactcaaaactcacaccaata 6430463  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 31105202 - 31105278
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttat-atgtgtgaagttaaagaaagtagtaaccaatatcaaa 487  Q
    ||||||||||| || |||||||||||| |||||   ||| ||||||| ||| || ||||||||||| ||||||||||    
T  31105202 ttgtgaattcgaacacaaaactcacaccaataaaactatgatgtgtggagtaaaggaaagtagtaatcaatatcaaa 31105278  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 9299925 - 9299851
Alignment:
Q  412 ttgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaaccaatatcaa 486  Q
    |||||||||||||||| |||||||||  ||||| | || ||||||| ||  |||| |||||||| ||||||||||    
T  9299925 ttgtgaattcggactcgaaactcacatcaataaacgtagatgtgtggagaaaaaggaagtagtacccaatatcaa 9299851  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 534130 - 534094
Alignment:
Q  407 aattattgtgaattcggactcaaaactcacactaata 443  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  534130 aattgttgtgaattcggactcaaaactcacaccaata 534094  T

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Target: scaffold0219 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 483
Target Start/End: Original strand, 27247 - 27322
Alignment:
Q  407 aattattgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaaccaatat 483  Q
    |||| ||||||||||||||||||| ||||||  ||||| |||| | ||||| ||  |||| ||||||||||||||||    
T  27247 aattgttgtgaattcggactcaaatctcacatcaataaacttagaagtgtggag-aaaaggaagtagtaaccaatat 27322  T

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