View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_high_7 (Length: 420)
Name: NF14541_high_7
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 41580667 - 41581071
Alignment:
| Q |
14 |
attttgacattcacacaaacagtttataattatatatatgcaaatcaagatacatataatacatacagaccgcactcgaagttaacttggttttctaaga |
113 |
Q |
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| T |
41580667 |
attttgacattcacacaaacagtttataattatatatatgcaaatcaagatacatataatacatacagaccgcactcgaagttaacttggttttctaaga |
41580766 |
T |
|
| Q |
114 |
aagatgtgattaaagaagcctatgctctttacctagttgctattgagaaatgtaaaataaacctaaatagaaagagagtagctagaggttaaggatcttt |
213 |
Q |
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| T |
41580767 |
aagatgtgattaaagaagcctatgctctttacctagttgctattgagaaatgtaaaataaacctaaatagaaagagagtagctagaggttaaggatcttt |
41580866 |
T |
|
| Q |
214 |
ttatggttaaggattcctataaatgtgaatcttaacccagttgaaaggactaaggagannnnnnnnnnnnnaacagcagtcttggagagatccttctaaa |
313 |
Q |
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| T |
41580867 |
ttatggttaaggattcctataaatgtgaatcttaacccagttgaaaggactaaggagagtgtgtgtgtgtgaacaacagtcttggtgagatccttctaaa |
41580966 |
T |
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| Q |
314 |
acaaagtgtaagagaataagcctattaatttgttcaagctttgtgaagtccagattgttatcatgaa-ttttttaagtgcttttacttttgtaactcccg |
412 |
Q |
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| T |
41580967 |
acaaagtgtaagagaataagcctattaatttgttcaagctttgtgaagtccagattgttatcatgaatttttttaagtgcttttacttttggaactccct |
41581066 |
T |
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| Q |
413 |
ttcat |
417 |
Q |
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| T |
41581067 |
ttcat |
41581071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 40180430 - 40180383
Alignment:
| Q |
94 |
gttaacttggttttctaagaaagatgtgattaaagaagcctatgctct |
141 |
Q |
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| T |
40180430 |
gttaacttggttttctaaaaataatatgattaaagaagcctatgctct |
40180383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 42127982 - 42127944
Alignment:
| Q |
214 |
ttatggttaaggattcctataaatgtgaatcttaaccca |
252 |
Q |
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| T |
42127982 |
ttatggttaaggattcctttaaatatgaatcttaaccca |
42127944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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