View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_low_1 (Length: 610)
Name: NF14541_low_1
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 600
Target Start/End: Original strand, 39046248 - 39046826
Alignment:
| Q |
18 |
tgcatcaccagcaaaaatggacaagacaagatttttatatgcataatttaattacaagagaaacaagattaatacacatttaacaccatcaaaattaaaa |
117 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39046248 |
tgcatcactagcaaaaatggacaagacaagatttttatatgcataatttaattacaagagaaacaagattaatacacatttaacaccagcaaaattaaaa |
39046347 |
T |
|
| Q |
118 |
ccttagcaccagcttaaaacaattaacactaggattaaaataaaaagtatgttttattgtaattagattattagaaaaccgacttccactaaggattaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39046348 |
ccttagcaccagcttaaaacaattaacactaggattaaaataaaaagtatgttttattgtaattagattattagaaaacagacttccactaaggattaag |
39046447 |
T |
|
| Q |
218 |
caattaagtaaataagaaagagagaaaatcggaagaaactaaggaatgaaatcacgtcaccacttaaatagaattattgttaaatattataaatttgaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39046448 |
caattaagtaaataagaaagagagaaaatcggaagaaactaaggaatgaaatcacgtcaccacttaaatagaattattgttaaatattataaatttgaaa |
39046547 |
T |
|
| Q |
318 |
aggaaatagggttaattgagcaaatcagcctccatggcaaatgaaaatgaaataacatttccagttgcaaaatctggaatagggtttctccatgaagtaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39046548 |
aggaaatagggttaattgagcaaatcagcctccatggcaaatgaaaatgaaataacatttccagttgcaaaatctggaatagggtttctccatgaagtaa |
39046647 |
T |
|
| Q |
418 |
aagctttatttcatggtaagaggaaagagtatgatgagtttataaaagagatacttgatttcaagaattcaaacaaagaatgaataaggtacttctagct |
517 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39046648 |
aagctttatttcatggtaagaggaaagagtgtgatgagtttataaaagagatacttgatttcaagaattcaaacaaagaatgaataaggtactt----ct |
39046743 |
T |
|
| Q |
518 |
agggcataatcatttaatcttaggattcaactcctacatgaagcatcatgcaatcagacttccaattccaatcgatgatgatg |
600 |
Q |
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| T |
39046744 |
agggcataatcatttaatattaggattcaactcctacatgaagcatcatgcaatcagacttccaattccaatcgatgatgatg |
39046826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 528 - 596
Target Start/End: Complemental strand, 30865266 - 30865198
Alignment:
| Q |
528 |
catttaatcttaggattcaactcctacatgaagcatcatgcaatcagacttccaattccaatcgatgat |
596 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||| || ||||||||| ||||| ||| |||||||| |
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| T |
30865266 |
catttaatcttgggattcaacacctacatgaagcattatcgaatcagactgccaatcccagtcgatgat |
30865198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 38869066 - 38868994
Alignment:
| Q |
348 |
tccatggcaaatgaaaatgaaataacatttccagttgcaaaatctggaatagggtttctccatgaagtaaaag |
420 |
Q |
| |
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| T |
38869066 |
tccatggcaaacgaacatggaatcgcacttccagttctaaaatctggaattgggtttctccatgaagtaaaag |
38868994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 529 - 600
Target Start/End: Complemental strand, 38868844 - 38868773
Alignment:
| Q |
529 |
atttaatcttaggattcaactcctacatgaagcatcatgcaatcagacttccaattccaatcgatgatgatg |
600 |
Q |
| |
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||||||| || |||||||||| |||||||| |||| || |||||||||||||||||||||| || |||||| |
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| T |
38868844 |
atttaattttgggattcaactactacatgaggcattatcgaatcagacttccaattccaatccatcatgatg |
38868773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 471
Target Start/End: Complemental strand, 33468934 - 33468809
Alignment:
| Q |
346 |
cctccatggcaaatgaaaatgaaataacatttccagttgcaaaatctggaatagggtttctccatgaagtaaaagctttatttcatggtaagaggaaaga |
445 |
Q |
| |
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||||||||| ||| ||| ||| ||| ||| |||||||| |||||||| ||||||||||||||||||||||||| || | |||||||||||||| || | |
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| T |
33468934 |
cctccatggaaaacgaacatggaatcacacttccagttctaaaatctgaaatagggtttctccatgaagtaaaaactgtgtttcatggtaagagagaaaa |
33468835 |
T |
|
| Q |
446 |
gtatgatgagtttataaaagagatac |
471 |
Q |
| |
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|||||| |||||||||||||| |||| |
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| T |
33468834 |
gtatgaagagtttataaaagacatac |
33468809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 34603936 - 34603991
Alignment:
| Q |
411 |
gaagtaaaagctttatttcatggtaagaggaaagagtatgatgagtttataaaaga |
466 |
Q |
| |
|
||||||||| || | ||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
34603936 |
gaagtaaaatctgtgtttcatggtaagagggaagagtatgaagagtttataaaaga |
34603991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 34725213 - 34725268
Alignment:
| Q |
411 |
gaagtaaaagctttatttcatggtaagaggaaagagtatgatgagtttataaaaga |
466 |
Q |
| |
|
||||||||| || | ||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
34725213 |
gaagtaaaatctgtgtttcatggtaagagggaagagtatgaagagtttataaaaga |
34725268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 596
Target Start/End: Original strand, 3045689 - 3045767
Alignment:
| Q |
518 |
agggcataatcatttaatcttaggattcaactcctacatgaagcatcatgcaatcagacttccaattccaatcgatgat |
596 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||||||||||| | ||||||||| ||||||||| |||||||| |
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|
| T |
3045689 |
agggcataaatatttaattttaggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgat |
3045767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 600
Target Start/End: Complemental strand, 33468718 - 33468638
Alignment:
| Q |
520 |
ggcataatcatttaatcttaggattcaactcctacatgaagcatcatgcaatcagacttccaattccaatcgatgatgatg |
600 |
Q |
| |
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||||||||||||| || || ||||||||| ||||||||||||| || |||| |||| ||||||||||| ||||||||| |
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| T |
33468718 |
ggcataatcatttgattttgggattcaacaactacatgaagcattatcgtatcacactttcaattccaatcaatgatgatg |
33468638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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