View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_low_12 (Length: 392)
Name: NF14541_low_12
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 44246616 - 44246257
Alignment:
| Q |
16 |
aaggtaacggacgtagatcgtgcaattctagcactcaagacccagagacgcaaacttgctcagtatcaacaaaaggttacctttttcaataccctcaatt |
115 |
Q |
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| T |
44246616 |
aaggtaaccgacgtagatcgtgcaattctagcactcaagacccagagacgcaaacttgctcagtatcaacaaaaggttacctttttcaataccctcaatt |
44246517 |
T |
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| Q |
116 |
tcatatctcttattccattctcattgtgcacgtcaaattttctggtaattacttattagggctaaaagatcaaaaagtaattgaactcaagtatagttag |
215 |
Q |
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| T |
44246516 |
tcatatctcttattccattctcattgtgcacgtcaaattttctggtaattacttattagggctaaaagatcaaaaagtaattgaactcaagtatagttag |
44246417 |
T |
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| Q |
216 |
tttagatttagttaagttagttattgttaacttcttctcattttcatatggacttatatgtataaataggaccactgtattgattacttttgttcaatct |
315 |
Q |
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| T |
44246416 |
tttagatttagttaagttagttattgttaacttcttctcattttcatatggacttatatgtataaataggaccactgtattgattacttttgttcaatcg |
44246317 |
T |
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| Q |
316 |
acaaagtcatcaataatatttgttcattagttttacatacttttcaagttatatcaagaa |
375 |
Q |
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| T |
44246316 |
ataaagtcatcaataatatttgttcattagttttacatacttttcaagttatatcaagaa |
44246257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 3104322 - 3104367
Alignment:
| Q |
239 |
ttgttaacttcttctcattttcatatggacttatatgtataaatag |
284 |
Q |
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| T |
3104322 |
ttgttatcctcttctcatttttatatggacttatatgtattaatag |
3104367 |
T |
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