View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_low_13 (Length: 391)
Name: NF14541_low_13
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 31909720 - 31910070
Alignment:
| Q |
18 |
atgtataacaattctgcagaaatataaagccggctttttgctgccgatggaacaatattattggttattttcggggggtttcgttctgattttgaatcat |
117 |
Q |
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| T |
31909720 |
atgtataacaattctgcagaaatataaagccggctttttgctgccgatggaacaatattattggttattttcggggggtttcgttctgattttgaatcat |
31909819 |
T |
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| Q |
118 |
gtaagtgaggtttaggtcgtggcattgttaataattattagccatttttgaaacgttttcattctatcaagtattaaacaggcgggcgagtctagattga |
217 |
Q |
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| T |
31909820 |
gtaagtgaggtttaggtcgtggcattgttaataattattagccatttttgaaacgttttcattctatcaagtattaaaca----ggcgagtctagattga |
31909915 |
T |
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| Q |
218 |
aagaaaaaatggatgtgttcaaagagtggacatctagatgaccatggaaagagaggaaaagaacaaaggagtgtggcactccacaagtggtgtctagaat |
317 |
Q |
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| T |
31909916 |
aagaaaaaatggatgtgttcaaagagtggacatctagatgaccatggaaagagaggaaaagaacaaaggagtgtggcactccacaagtggtgtctagaat |
31910015 |
T |
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| Q |
318 |
tatgcaagactgtatctgaaaatgagactgaactttactttgaattcatcttgca |
372 |
Q |
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| T |
31910016 |
tatgcaagactgtatctgaaaatgagactgaacttcactttgaattcatcttgca |
31910070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 142 - 313
Target Start/End: Original strand, 31901220 - 31901387
Alignment:
| Q |
142 |
ttgttaataattattagccatttttgaaacgttttcattctatcaagtattaaacaggcgggcgagtctagattgaaagaaaaaatggatgtgttcaaag |
241 |
Q |
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| T |
31901220 |
ttgttaataattattagccttttttgaaatgttttcattctatcaagtattaagcaggtg----agtctagattggaagaaagaatggatgtgttcaagg |
31901315 |
T |
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| Q |
242 |
agtggacatctagatgaccatggaaagagaggaaaagaacaaaggagtgtggcactccacaagtggtgtcta |
313 |
Q |
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| T |
31901316 |
agtggacatctagaagaccatggaaagagaggaaaagaacaaagaagtgtggcactccacaagtggtgtcta |
31901387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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