View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_low_17 (Length: 346)
Name: NF14541_low_17
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 14812593 - 14812918
Alignment:
| Q |
1 |
tgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
100 |
Q |
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| T |
14812593 |
tgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
14812692 |
T |
|
| Q |
101 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctttcatgtccaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
14812693 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctttcatgtccaaaa |
14812790 |
T |
|
| Q |
201 |
gttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacatagagattcactactttctgtattgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
14812791 |
gttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctactttctgtattgt |
14812888 |
T |
|
| Q |
301 |
aaggagtccattaggatatgtagagaaaat |
330 |
Q |
| |
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|| ||||||||||||||||||||||||||| |
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| T |
14812889 |
aaagagtccattaggatatgtagagaaaat |
14812918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 15259588 - 15259913
Alignment:
| Q |
1 |
tgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
100 |
Q |
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||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259588 |
tgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
15259687 |
T |
|
| Q |
101 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctttcatgtccaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
15259688 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctttcatgtccaaaa |
15259785 |
T |
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| Q |
201 |
gttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacatagagattcactactttctgtattgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
15259786 |
gttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctactttctgtattgt |
15259883 |
T |
|
| Q |
301 |
aaggagtccattaggatatgtagagaaaat |
330 |
Q |
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|| ||||||||||||||||||||||||||| |
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| T |
15259884 |
aaagagtccattaggatatgtagagaaaat |
15259913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 17521587 - 17521262
Alignment:
| Q |
1 |
tgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
100 |
Q |
| |
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||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521587 |
tgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaagttaat |
17521488 |
T |
|
| Q |
101 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctttcatgtccaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
17521487 |
aatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctttcatgtccaaaa |
17521390 |
T |
|
| Q |
201 |
gttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacatagagattcactactttctgtattgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
17521389 |
gttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctactttctgtattgt |
17521292 |
T |
|
| Q |
301 |
aaggagtccattaggatatgtagagaaaat |
330 |
Q |
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|| ||||||||||||||||||||||||||| |
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| T |
17521291 |
aaagagtccattaggatatgtagagaaaat |
17521262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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