View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_low_20 (Length: 300)
Name: NF14541_low_20
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 23265318 - 23265451
Alignment:
| Q |
27 |
ctgaatactctccattaatttccttcttccaaatcagcctatcctcacgaacagaagaatacaaaggtgttttgataatgtgctccacaacctgttgatt |
126 |
Q |
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| T |
23265318 |
ctgaatattcaccgttatttttcttcttccatatcagcctatcttcatgcactaaaggatataaaggtgtgttgataatgtgctccacaacctggtgatt |
23265417 |
T |
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| Q |
127 |
aaatattgaatgcaagaaaggcatattccaagac |
160 |
Q |
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| T |
23265418 |
gaaaattgaatgcagaaaaggcagattccaagac |
23265451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 33907646 - 33907819
Alignment:
| Q |
45 |
tttccttcttccaaatcagcctatcctcacgaacagaagaatacaaaggtgttttgataatgtgctccacaacctgttgattaaatattgaatgcaagaa |
144 |
Q |
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| T |
33907646 |
tttccttcttccatatcagcctatcttcatgtactgaaggaaataaaggtgtgttgataatgtgctccacaacctggtgattgaagacagaatgcagaaa |
33907745 |
T |
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| Q |
145 |
aggcatattccaagacnnnnnnncctgcaagatacaatctgaaacacgcagatttgctagcgtagacgcaacat |
218 |
Q |
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| T |
33907746 |
aggcagattccaagacttatggttcggtaaaatacaatctgagacacgcaggttagctagtgtggacgcaacat |
33907819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 20531489 - 20531438
Alignment:
| Q |
243 |
actccttcctcatacaaacaaaattccaaccaatccaaattattttcctatg |
294 |
Q |
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| T |
20531489 |
actccttcctcatacaaacaaaattccaaccaatacaaattattttcctatg |
20531438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 27502564 - 27502648
Alignment:
| Q |
45 |
tttccttcttccaaatcagcctatcctcacgaacagaagaatacaaaggtgttttgataatgtgctccacaacctgttgattaaa |
129 |
Q |
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||||||| |||||||||| || ||| ||||| || || ||||||| |||| |||| |||||||||||| |||||||||||||| |
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| T |
27502564 |
tttcctttttccaaatcaaccgatcttcacgcacttaatgatacaaatgtgtgttgacaatgtgctccaccacctgttgattaaa |
27502648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 44016055 - 44015941
Alignment:
| Q |
45 |
tttccttcttccaaatcagcctatcctcacgaacagaagaatacaaaggtgttttgataatgtgctccacaacctgttgattaaatattgaatgcaagaa |
144 |
Q |
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| T |
44016055 |
tttcctttttccaaatcaagcgatcctcgcgtactgaaggatacaaaggtgtgttgacaatatgctccaccacctgctgattgaaaactgaatgcagaaa |
44015956 |
T |
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| Q |
145 |
aggcatattccaaga |
159 |
Q |
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|| || ||||||||| |
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| T |
44015955 |
agacagattccaaga |
44015941 |
T |
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