View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14541_low_3 (Length: 588)
Name: NF14541_low_3
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Original strand, 38748542 - 38749061
Alignment:
| Q |
19 |
atgtcaatgtctctaagggattttttgggagagagaggttggtaggaagaatgaaacttgtgttgttggtgttgttcagcacaaatagtagtcattgtga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38748542 |
atgtcaatgtctctaagggattttttgggagagagaggttggtaggaagaatgaaacttgtgttgttggtgttgttcagcacaaatagtagtcattgtga |
38748641 |
T |
|
| Q |
119 |
aatgggggtgcaaataataataaaagtatgaggtgtggaaatgtt----aagagagagtg-------acgatgttgtgaatggaaagaaggggtgagaga |
207 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38748642 |
aatgagggtgcaaataataataagagtatgaggtgtggaaatgttgttaaagagagagtgtaatgtgacgatgttgtgaatggaaagaaggggtgagaga |
38748741 |
T |
|
| Q |
208 |
gttattatatagggaggagagagtgtgagttgagaaagagacaataaaatggtgacaaggatgggaataagggatggtaagggg-ggtatgtggctaggt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38748742 |
gttattatatagggaggagagagtgtgagttgagaaagagaaaataaaatggtgacaaggatgggaataagggatggtaagggggggtatgtggctaggt |
38748841 |
T |
|
| Q |
307 |
agcatttgagagtaacatgcaaaagagggtacgtggcagcttgttaattcattggggcctaatgttttggctatgtgtaattcgattacaagctctcaat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38748842 |
agcatttgagagtaacatgcaaaagagggtatgtggcagtttgttaattcattgggacctaatgttttggctatgtgtaattcgattacaagctctcaat |
38748941 |
T |
|
| Q |
407 |
tcaacaatatccgtgcctttttggttttgggtgacatgaaaattctagatcacgatatatagaattttatgtatagaatacacaaagaggtgtccatgca |
506 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38748942 |
tcaacaatatccgtgcccttttggttttgggtgacatgaaaattctagatcacgatatatagaattttatgtatagaatacacaaagaggtgtccatgaa |
38749041 |
T |
|
| Q |
507 |
atgtactttgatacattgca |
526 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38749042 |
atgtactttgatacattgca |
38749061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University