View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_low_5 (Length: 461)
Name: NF14541_low_5
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 1014773 - 1014343
Alignment:
| Q |
16 |
aatatgagagaattattaggtggggaaatgacgtgggagttcaacacttaattatttttggagggtaaattttatggtgcacaagtgagataagttccgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1014773 |
aatatgagagaattattaggtggggaaatgacgtgggagttcaacacttaattatttttggagggtaaattttatggtgcacaagtgagataagttccgc |
1014674 |
T |
|
| Q |
116 |
attatgttcaaacttatttatgaagaatgcgggaattttacaaaccatgaaagtatggagccgaagacaatggaaaggagaaatagaaagaaaactgtcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1014673 |
attatgttcaaacttatttatgaagaatgcgggaattttacaaaccatgaaagtatggagccgaagacaatggaaaggagaaatagaaagaaaactgtcc |
1014574 |
T |
|
| Q |
216 |
tcatgcttgaaggcctccgcagcatgtcaagtagtagcttctctattctgattgtcgtttaattagcttcaaccatgcaacttgctggtttgaactatct |
315 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1014573 |
tcatgcttgaaggcctctgcaacatgtcaagtagtagcttctctattctgattgtcgtttaattagcttcaaccatgcaacttgctggtttgaactatct |
1014474 |
T |
|
| Q |
316 |
ttgtcttgttgcacaagttcatgaaaaatgatctttaaatgatttagttagtaccggtatgctaaattcatatttgatgcataaccacaatgtagaaggc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1014473 |
ttgtcttgttgcacaagttcatgaaaaatgatctttaaatgatttagttagtaccggtatgctaaattcatatttgatgcataaccacaatgtagaaggc |
1014374 |
T |
|
| Q |
416 |
ctgttcatggatgaaactaagtagttgtttt |
446 |
Q |
| |
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|||||||| |||||||||||||||||||||| |
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| T |
1014373 |
ctgttcattgatgaaactaagtagttgtttt |
1014343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 1044591 - 1044642
Alignment:
| Q |
314 |
ctttgtcttgttgcacaagttcatgaaaaatgatctttaaatgatttagtta |
365 |
Q |
| |
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|||||||||| |||||||||| | ||||||| | |||||||||||||||||| |
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|
| T |
1044591 |
ctttgtcttgctgcacaagttaaggaaaaatcacctttaaatgatttagtta |
1044642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 996547 - 996501
Alignment:
| Q |
314 |
ctttgtcttgttgcacaagttcatgaaaaatgatctttaaatgattt |
360 |
Q |
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|||||||||| |||||||||| | ||||| ||||||||||||||||| |
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| T |
996547 |
ctttgtcttggtgcacaagttaaagaaaattgatctttaaatgattt |
996501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 40638155 - 40638383
Alignment:
| Q |
16 |
aatatgagagaattattaggtggggaaatgacgtgggagttcaacacttaattatttttggagggtaaattttatggtgcacaagtgagataagttccgc |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
40638155 |
aatatgagagaattattaggtgggaaaatgatgtgggagttcaacactttattatttttggagggtaaattttatggtgcacaagtgaggtaagttcggc |
40638254 |
T |
|
| Q |
116 |
atta-tgttcaaacttatttatgaagaatgcgggaattttacaaaccatgaaagtatggagccgaagacaatggaaaggagaaatagaaagaaaactgtc |
214 |
Q |
| |
|
|||| || || ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
40638255 |
attattgctc-aacttatttctgaagaatacgggaattttacaaaccatgaaagtatggagccgaagacgatggaaaggagaaatag-aagaaaactgtg |
40638352 |
T |
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| Q |
215 |
ctcatgcttgaaggcctccgcagcatgtcaa |
245 |
Q |
| |
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||| || |||||||||| ||| |||||||| |
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|
| T |
40638353 |
ctcgagcatgaaggcctctgcaacatgtcaa |
40638383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 244 - 446
Target Start/End: Original strand, 40638416 - 40638617
Alignment:
| Q |
244 |
aagtagtagcttctctattctgattgtcgtttaattagcttcaaccatgcaacttgctggtttgaactatctttgtcttgttgcacaagttcatgaaaaa |
343 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40638416 |
aagtactagtttctctattctgcttgtcgtttaattagcttcaaccatgcaacttgctggtttgaactatctttgtcttgttgcacaagttcatgaaaaa |
40638515 |
T |
|
| Q |
344 |
tgatctttaaatgatttagttagtaccggtatgctaaattcatatttgatgcataaccacaatgtagaaggcctgttcatggatgaaactaagtagttgt |
443 |
Q |
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||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||| |||||||||||||| |
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| T |
40638516 |
tgatctttaaatggtttagttaatacttgtatgctaaattcatatctgatgcataaccacaatgtaggaggcgtgttcatagat-taactaagtagttgt |
40638614 |
T |
|
| Q |
444 |
ttt |
446 |
Q |
| |
|
||| |
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|
| T |
40638615 |
ttt |
40638617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 40641427 - 40641478
Alignment:
| Q |
314 |
ctttgtcttgttgcacaagttcatgaaaaatgatctttaaatgatttagtta |
365 |
Q |
| |
|
|||||||||| |||||||||| | |||||| |||||||||||||||||||| |
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|
| T |
40641427 |
ctttgtcttgctgcacaagttaaggaaaaaccatctttaaatgatttagtta |
40641478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 22068773 - 22068802
Alignment:
| Q |
340 |
aaaatgatctttaaatgatttagttagtac |
369 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22068773 |
aaaatgatctttaaatgatttagttagtac |
22068802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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