View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14541_low_7 (Length: 432)

Name: NF14541_low_7
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14541_low_7
NF14541_low_7
[»] chr2 (9 HSPs)
chr2 (75-432)||(27651758-27652098)
chr2 (186-287)||(11682948-11683049)
chr2 (186-287)||(11718109-11718210)
chr2 (107-174)||(11683085-11683152)
chr2 (107-174)||(11718006-11718073)
chr2 (25-78)||(11684292-11684345)
chr2 (25-78)||(11716813-11716866)
chr2 (332-395)||(11682841-11682904)
chr2 (332-395)||(11718254-11718317)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 75 - 432
Target Start/End: Complemental strand, 27652098 - 27651758
Alignment:
Q  75 aatcgagaggagctgatcaaagaagtggtcactggtcagagatagggttgagaagcaagtcaatgtgcttcttcttattctactgatgtttataaccggt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27652098 aatcgagaggagctgatcaaagaagtggtcactggtcagagatagggttgagaagcaagtcaatgtgcttcttcttattctactgatgtttataaccgtt 27651999  T
Q  175 gtcttttgaggcaaacccgaggatagggagtggctgaccggcgagtggctgccggatgaggttaagaaattcgtcataggcagc-atgagtttcgtcagt 273  Q
    ||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||| ||||||||||| | |||||||||||||    
T  27651998 gtcttttgaggcaaacccgaggatagggagtggctg---------------ccggatgaggttaagaaattcatcataggcagccacgagtttcgtcagt 27651914  T
Q  274 cttaggctggtagatgccttctaattcattgttaacgatagcggggtggcttcattacttgaaacacataacttgctctgaattcagttttcttaatttc 373  Q
    ||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27651913 cttaggctggtagatgccttct---tcatcgttaacgatagcggggtggcttcattacttgaaacacataacttgctctgaattcggttttcttaatttc 27651817  T
Q  374 gctgcagtttggcgtgtacttgtattccttgaagctcaatgattttgccttactcctat 432  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  27651816 gctgcagttttgcgtgtacttgtattccttgaaactcaatgattttgccttactcctat 27651758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 186 - 287
Target Start/End: Complemental strand, 11683049 - 11682948
Alignment:
Q  186 caaacccgaggatagggagtggctgaccggcgagtggctgccggatgaggttaagaaattcgtcataggcagcatgagtttcgtcagtcttaggctggta 285  Q
    ||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  11683049 caaacccgagggtagagagtggctgaccggcaagtggctggcggatgaggttaagaaattcgtcataggcagcacgggtttcgtcagtcttaggctggta 11682950  T
Q  286 ga 287  Q
    ||    
T  11682949 ga 11682948  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 11718109 - 11718210
Alignment:
Q  186 caaacccgaggatagggagtggctgaccggcgagtggctgccggatgaggttaagaaattcgtcataggcagcatgagtttcgtcagtcttaggctggta 285  Q
    ||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  11718109 caaacccgagggtagagagtggctgaccggcaagtggctggcggatgaggttaagaaattcgtcataggcagcacgggtttcgtcagtcttaggctggta 11718208  T
Q  286 ga 287  Q
    ||    
T  11718209 ga 11718210  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 11683152 - 11683085
Alignment:
Q  107 tggtcagagatagggttgagaagcaagtcaatgtgcttcttcttattctactgatgtttataaccggt 174  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| || ||| |||| |||||||    
T  11683152 tggtcagagatagggttgagaatcaagtcaatgtgcttcctcttattccacggatatttagaaccggt 11683085  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 11718006 - 11718073
Alignment:
Q  107 tggtcagagatagggttgagaagcaagtcaatgtgcttcttcttattctactgatgtttataaccggt 174  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| || ||| |||| |||||||    
T  11718006 tggtcagagatagggttgagaatcaagtcaatgtgcttcctcttattccacggatatttagaaccggt 11718073  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 11684345 - 11684292
Alignment:
Q  25 atataataacgagttgttgttaaacgttacaactaattagatagaggcataatc 78  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  11684345 atataataacgagttgttgttaaacattgtaaccaattagatagaggcataatc 11684292  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 11716813 - 11716866
Alignment:
Q  25 atataataacgagttgttgttaaacgttacaactaattagatagaggcataatc 78  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  11716813 atataataacgagttgttgttaaacattgtaaccaattagatagaggcataatc 11716866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 395
Target Start/End: Complemental strand, 11682904 - 11682841
Alignment:
Q  332 ttgaaacacataacttgctctgaattcagttttcttaatttcgctgcagtttggcgtgtacttg 395  Q
    |||| |||||| | ||||| ||||||| |||||||||||||||||| ||||||| |||||||||    
T  11682904 ttgacacacatgatttgctttgaattcggttttcttaatttcgctgtagtttggtgtgtacttg 11682841  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 395
Target Start/End: Original strand, 11718254 - 11718317
Alignment:
Q  332 ttgaaacacataacttgctctgaattcagttttcttaatttcgctgcagtttggcgtgtacttg 395  Q
    |||| |||||| | ||||| ||||||| |||||||||||||||||| ||||||| |||||||||    
T  11718254 ttgacacacatgatttgctttgaattcggttttcttaatttcgctgtagtttggtgtgtacttg 11718317  T

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