View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14541_low_8 (Length: 431)
Name: NF14541_low_8
Description: NF14541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14541_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 63 - 415
Target Start/End: Complemental strand, 536246 - 535886
Alignment:
| Q |
63 |
agggttctttgaaaatttattctatgatttagcaagggtgttgttgtttttctgcattaaaaacaatgaagttttagactctttgctatatttgctacca |
162 |
Q |
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| T |
536246 |
agggttctttgaaaatttattctatgatttggcaagggtgttgtggtttttctgcactaaaaacaatgaagttttagactctttgctatatttgctacca |
536147 |
T |
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| Q |
163 |
ttattattcctaattttgcattaatttcatgaaggccgaattttgttttcatgtttagcaaaaaccaccttctaagatagaagttggtacttccaatatt |
262 |
Q |
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| T |
536146 |
ttattattcctaattttgcattaatttcatgaagggcgaattttgttttcatgtttagcaaaaaccaccttctaagatagaagttggtacttccaatatt |
536047 |
T |
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| Q |
263 |
ttgttgacatccttttcacatgcattggctatagtgttaaaaattatgggcgtggtttaagtttgtttggtatactttgagaattcgacaatctttaaaa |
362 |
Q |
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| T |
536046 |
ttgttgacatccttttcacatgcattggctatagtgttaaaaattatgggcgtggtttaagtttgtttggtatgctttgagaattcgacaatctttaaaa |
535947 |
T |
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| Q |
363 |
tacggta-------atgtttttcttaatatccaacttgatttagacaaat-aagttataag |
415 |
Q |
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| T |
535946 |
tacggtaaatggtcatgtttttcttaatatccaacttgatttagacaaataaagttataag |
535886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 536609 - 536529
Alignment:
| Q |
1 |
aagagatttagaaaaagttttattgtattgttcatggtttctttgtttga-------cttacgtgggatagggttctttga |
74 |
Q |
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| T |
536609 |
aagaggtttagaaaaagttttattgtattgttcatggtttctttgtttgattatattcttatgtgggatagggttctttga |
536529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 5434650 - 5434591
Alignment:
| Q |
99 |
ggtgttgttgtttttctgcattaaaaacaatgaagttttagactctttgctatatttgct |
158 |
Q |
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| T |
5434650 |
ggtgttgtggtttttctgcattaaaaagaattaagttttaggctattttctatatttgct |
5434591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5434828 - 5434785
Alignment:
| Q |
1 |
aagagatttagaaaaagttttattgtattgttcatggtttcttt |
44 |
Q |
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| T |
5434828 |
aagaggtttggaaaaagttttattgtattattcatggtttcttt |
5434785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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