View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14542_low_1 (Length: 557)

Name: NF14542_low_1
Description: NF14542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14542_low_1
NF14542_low_1
[»] chr3 (8 HSPs)
chr3 (59-242)||(37119069-37119252)
chr3 (395-551)||(37119374-37119530)
chr3 (270-365)||(37119249-37119344)
chr3 (400-537)||(37131101-37131238)
chr3 (406-537)||(37135158-37135289)
chr3 (424-537)||(37125064-37125177)
chr3 (301-350)||(37124937-37124986)
chr3 (260-319)||(37135385-37135444)
[»] chr5 (1 HSPs)
chr5 (394-537)||(1193920-1194063)
[»] chr7 (1 HSPs)
chr7 (394-537)||(31296978-31297121)
[»] chr1 (2 HSPs)
chr1 (406-537)||(20269090-20269221)
chr1 (260-319)||(20269317-20269376)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 9e-90; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 59 - 242
Target Start/End: Original strand, 37119069 - 37119252
Alignment:
Q  59 caataattaagatttcagaactgtctttctcaattttgtactcacgtactgccttttttcaagtactacctactttgctaataacatacgaagaaaaaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37119069 caataattaagatttcagaactgtctttctcaattttgtactcacgtactgccttttttcaagtactgcctactttgctaataacatacgaagaaaaaat 37119168  T
Q  159 acaaaatatccgtcttaaatgaccaaaataaacatcaaactttgactcacacacagtcacgccaaacatgctcacaccatacat 242  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37119169 gcaaaaaatccgtcttaaatgaccaaaataaacatcaaactttgactcacacacagtcacgccaaacatggtcacaccatacat 37119252  T

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Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 395 - 551
Target Start/End: Original strand, 37119374 - 37119530
Alignment:
Q  395 acttcaccaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgat 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119374 acttcaccaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgat 37119473  T
Q  495 ctttgctatctccttttatagctgcactttccactcctgaataatattcttcgacat 551  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  37119474 ccttgctatctccttttacagctgcactttccactcctgaataatatttttggacat 37119530  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 270 - 365
Target Start/End: Original strand, 37119249 - 37119344
Alignment:
Q  270 acattcacatcatggaacaagaagggtcgtcccttatctcacacacagggacagggtaatgaggataaccagctacacaaggccatgctacaattg 365  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119249 acattcacatgatggaacaagaagggtcgtcccttatctcacacacagggacagggtaatgaggataaccagctacacaaggccatgctacaattg 37119344  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 400 - 537
Target Start/End: Original strand, 37131101 - 37131238
Alignment:
Q  400 accaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgatctttg 499  Q
    ||||||||||||||| ||||||||||||||||||||||| || ||| |||||||| || |||  |||||||||||||| ||||||||||||||||| |||    
T  37131101 accaacactcaccaattctgcatgacagaatttctttcttagcagagatgtgagtctaactgaatctatttgttctcctgttacctctatttgatccttg 37131200  T
Q  500 ctatctccttttatagctgcactttccactcctgaata 537  Q
     | ||||||| |||||||| || ||| |||||||||||    
T  37131201 ttttctccttgtatagctgtaccttctactcctgaata 37131238  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 406 - 537
Target Start/End: Complemental strand, 37135289 - 37135158
Alignment:
Q  406 actcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgatctttgctatct 505  Q
    ||||||||||||||||| || |||||||||||| |||||| |||  |||||| ||| ||| || | |||||||||||| ||||||||||| ||| |||||    
T  37135289 actcaccaaatctgcataaccgaatttctttcttagtagagatgccagtttaactgagtcaatctcttctccagttacttctatttgatccttgttatct 37135190  T
Q  506 ccttttatagctgcactttccactcctgaata 537  Q
    |||||||||| || || |||||||||||||||    
T  37135189 ccttttatagttgtaccttccactcctgaata 37135158  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 424 - 537
Target Start/End: Original strand, 37125064 - 37125177
Alignment:
Q  424 acagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgatctttgctatctccttttatagctgcactt 523  Q
    ||||||||||||||| || |||||||||||| || ||| |||||||| |||||| || ||||| |||| ||| ||||||| ||||| |||||||||||||    
T  37125064 acagaatttctttcttagcagacatgtgagtctaactgagtctatttattctcctgtaacctccattttatccttgctatgtccttgtatagctgcactt 37125163  T
Q  524 tccactcctgaata 537  Q
    ||||||||| ||||    
T  37125164 tccactcctaaata 37125177  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 37124937 - 37124986
Alignment:
Q  301 ccttatctcacacacagggacagggtaatgaggataaccagctacacaag 350  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||||    
T  37124937 ccttatctcacacacagggacagggtaatgaggaatactagctacacaag 37124986  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 37135444 - 37135385
Alignment:
Q  260 attcttgatgacattcacatcatggaacaagaagggtcgtcccttatctcacacacaggg 319  Q
    ||||| |||||||||||||| |||||||||||||| |||| | |||||||| ||||||||    
T  37135444 attctagatgacattcacatgatggaacaagaaggttcgttctttatctcatacacaggg 37135385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 394 - 537
Target Start/End: Complemental strand, 1194063 - 1193920
Alignment:
Q  394 cacttcaccaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttga 493  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||| || ||| ||||||||||||||| |||| ||||||||||    
T  1194063 cacttcaccaacactcaccaattctgcatgacagaatttctttcttagcagaaatgtgagtctaactgagtctatttgttctcctgttatctctatttga 1193964  T
Q  494 tctttgctatctccttttatagctgcactttccactcctgaata 537  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  1193963 tccttgctatctccttttatagctgcactttccactcctgaata 1193920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 394 - 537
Target Start/End: Original strand, 31296978 - 31297121
Alignment:
Q  394 cacttcaccaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttga 493  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| || ||| |||||| | || ||| ||||||||||||||| |||| ||||||||||    
T  31296978 cacttcaccaacactcaccaattctgcatgacataatttctttcttagcagagatgtgactctaactgagtctatttgttctcctgttatctctatttga 31297077  T
Q  494 tctttgctatctccttttatagctgcactttccactcctgaata 537  Q
    || ||||||||| |||||||||||||||||||||||||||||||    
T  31297078 tccttgctatctgcttttatagctgcactttccactcctgaata 31297121  T

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Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 406 - 537
Target Start/End: Complemental strand, 20269221 - 20269090
Alignment:
Q  406 actcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgatctttgctatct 505  Q
    ||||||||||||||||| || |||||||||||| |||||| |||  |||||| ||| ||| || | |||||||||||| ||||||||||| ||| |||||    
T  20269221 actcaccaaatctgcataaccgaatttctttcttagtagagatgccagtttaactgagtcaatctcttctccagttacttctatttgatccttgttatct 20269122  T
Q  506 ccttttatagctgcactttccactcctgaata 537  Q
    |||||||||| ||||| |||||||||||||||    
T  20269121 ccttttatagttgcaccttccactcctgaata 20269090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 20269376 - 20269317
Alignment:
Q  260 attcttgatgacattcacatcatggaacaagaagggtcgtcccttatctcacacacaggg 319  Q
    ||||| |||||||||||||| |||||||||||||| |||| | |||||||| ||||||||    
T  20269376 attctagatgacattcacatgatggaacaagaaggttcgttctttatctcatacacaggg 20269317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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