View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14542_low_5 (Length: 316)
Name: NF14542_low_5
Description: NF14542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14542_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9093924 - 9093680
Alignment:
| Q |
1 |
cgaattgattaacaaaaacatgaaaggataagaaaagaatgaaaaaacgaagtaactcactggttttgggaccagctggatgattccaaaaagcttgaag |
100 |
Q |
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| T |
9093924 |
cgaattgattaacaaaaacatgaaaggataagaaaagaatgaaaaaacgaagtaactcactggttttgggaccagctggatgattccaaaaagcttgaag |
9093825 |
T |
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| Q |
101 |
ctttgaagtcgccatgaaatgaatcgttcttcttctcttcgattgaaaggcgaattcgatttgggttcagttaccagtctaccaccacttacaaattata |
200 |
Q |
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| T |
9093824 |
ctttgaagtcgccatgaaatgaatcgttcttcttctcttcgattgaaaggggaattcgatttgggttcagctaccagtctaccaccacttacaaattata |
9093725 |
T |
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| Q |
201 |
ttatttgc-nnnnnnnnccctaaaaaatattatttgttttcgtaa |
244 |
Q |
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| T |
9093724 |
ttatttgctttttttttccgtaaaaaatattatttgttttcgtaa |
9093680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 9089984 - 9089889
Alignment:
| Q |
41 |
gaaaaaacgaagtaactcactggttttgggaccagctggatgattccaaaaagcttgaagctttgaagtcgccatgaaatgaatcgttcttcttct |
136 |
Q |
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| T |
9089984 |
gaaaaagcgaagtaactcactggttttggggccaattggatgattccaaaaggcttggagctttgaagacaccatgaaatgaattcttcttcttct |
9089889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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