View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14542_low_6 (Length: 312)
Name: NF14542_low_6
Description: NF14542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14542_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 3699760 - 3699571
Alignment:
| Q |
1 |
tttgttactccttagtttaggtaaatgcgttccactacaatacaatgtatactatgaccttatacttcatatgttccatgattcatcattgtttgtttag |
100 |
Q |
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| T |
3699760 |
tttgttactccttagtttaggtaaatgcgttacactacaatacaatgtatactatgaccttatacttcatatgttccatgattcatcattgtttgtttag |
3699661 |
T |
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| Q |
101 |
gttaagctatagtgtttgtttaattaaactctaaataaggatgaaacttgggaatggaaacacccttctttgaaactttcgtagtgaaat |
190 |
Q |
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| T |
3699660 |
tttaagctatagtgtttgtttaattaaactctaaataaggatgaaacttgggaatggaaacacccttctttgaaactttcgtagtgaaat |
3699571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 184 - 294
Target Start/End: Complemental strand, 3699539 - 3699429
Alignment:
| Q |
184 |
gtgaaattcattaaaagggggattgaatggcgagaatttccatcagattctctccgataaaatttccacgggagagaatctcaattctatgaggtgcttg |
283 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3699539 |
gtgaaattcattaagagggggattgaatggcgagaatttccatcagattctctccgataaaatttccacgggagagaatctcaattctatgaggtgcctg |
3699440 |
T |
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| Q |
284 |
caagtactccg |
294 |
Q |
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| T |
3699439 |
caagtactccg |
3699429 |
T |
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