View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14542_low_9 (Length: 239)

Name: NF14542_low_9
Description: NF14542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14542_low_9
NF14542_low_9
[»] chr1 (8 HSPs)
chr1 (1-220)||(16750156-16750374)
chr1 (66-211)||(25853556-25853699)
chr1 (77-210)||(47453700-47453831)
chr1 (66-211)||(10138450-10138593)
chr1 (66-162)||(11812139-11812235)
chr1 (1-64)||(47453580-47453643)
chr1 (1-58)||(10138641-10138699)
chr1 (1-58)||(25853732-25853790)
[»] chr2 (10 HSPs)
chr2 (54-209)||(25480329-25480482)
chr2 (54-209)||(25487935-25488088)
chr2 (66-211)||(17972178-17972321)
chr2 (66-211)||(30649340-30649483)
chr2 (66-211)||(30654039-30654182)
chr2 (66-211)||(9182223-9182366)
chr2 (1-72)||(30649517-30649589)
chr2 (66-124)||(28450439-28450497)
chr2 (80-134)||(30616168-30616222)
chr2 (74-174)||(27417694-27417799)
[»] chr8 (13 HSPs)
chr8 (66-211)||(4239833-4239976)
chr8 (66-211)||(23083388-23083531)
chr8 (66-211)||(17023382-17023528)
chr8 (66-211)||(17553875-17554021)
chr8 (66-211)||(40127398-40127541)
chr8 (74-211)||(38184105-38184243)
chr8 (66-211)||(8320133-8320279)
chr8 (66-160)||(25369239-25369333)
chr8 (1-72)||(34116962-34117032)
chr8 (1-72)||(40127292-40127364)
chr8 (1-75)||(17023559-17023633)
chr8 (1-75)||(17554052-17554126)
chr8 (1-42)||(38184022-38184063)
[»] chr5 (14 HSPs)
chr5 (66-211)||(36939017-36939160)
chr5 (66-211)||(39521578-39521721)
chr5 (66-211)||(36426792-36426935)
chr5 (66-211)||(559917-560060)
chr5 (66-211)||(26670426-26670572)
chr5 (66-211)||(26942023-26942169)
chr5 (66-211)||(41999856-41999999)
chr5 (66-191)||(9911792-9911915)
chr5 (1-72)||(42000033-42000105)
chr5 (1-64)||(26670614-26670678)
chr5 (1-64)||(26942211-26942275)
chr5 (1-72)||(36938911-36938983)
chr5 (1-64)||(39521763-39521827)
chr5 (12-64)||(36426977-36427029)
[»] chr4 (11 HSPs)
chr4 (66-211)||(33465857-33466000)
chr4 (66-206)||(37261367-37261505)
chr4 (66-211)||(31271921-31272064)
chr4 (74-191)||(12877498-12877613)
chr4 (66-142)||(39318870-39318946)
chr4 (113-211)||(19105180-19105279)
chr4 (1-58)||(31272095-31272153)
chr4 (5-42)||(32222587-32222624)
chr4 (1-72)||(19105343-19105413)
chr4 (1-58)||(37261278-37261336)
chr4 (89-123)||(41815294-41815328)
[»] chr3 (13 HSPs)
chr3 (66-211)||(3686537-3686680)
chr3 (66-211)||(18470365-18470508)
chr3 (66-211)||(23662921-23663064)
chr3 (66-211)||(8886377-8886520)
chr3 (67-158)||(38206114-38206205)
chr3 (68-160)||(24755990-24756082)
chr3 (68-160)||(24764987-24765079)
chr3 (66-120)||(12967344-12967398)
chr3 (1-72)||(3686714-3686786)
chr3 (12-72)||(18470542-18470602)
chr3 (1-58)||(23662832-23662890)
chr3 (107-162)||(12114318-12114373)
chr3 (1-42)||(12967239-12967280)
[»] scaffold0045 (1 HSPs)
scaffold0045 (68-211)||(81500-81644)
[»] scaffold0070 (2 HSPs)
scaffold0070 (66-160)||(61790-61884)
scaffold0070 (66-160)||(65992-66086)
[»] chr7 (5 HSPs)
chr7 (74-162)||(10389876-10389964)
chr7 (66-174)||(21667746-21667853)
chr7 (66-121)||(30492779-30492834)
chr7 (75-159)||(15984696-15984779)
chr7 (1-37)||(21667931-21667966)
[»] chr6 (5 HSPs)
chr6 (85-191)||(12796289-12796393)
chr6 (1-64)||(16836238-16836302)
chr6 (66-110)||(16836344-16836388)
chr6 (77-119)||(15998134-15998176)
chr6 (73-135)||(17285353-17285415)
[»] scaffold0060 (1 HSPs)
scaffold0060 (77-120)||(49542-49585)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 16750156 - 16750374
Alignment:
Q  1 tttctatgtaaatatttacccctttaaataaagaataatgggagttctagtgggagcacgacatgagtggggacactatatctgatcacattccagtaat 100  Q
    ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16750156 tttctatgtaaatatttacccctttaaataaagaatagtgggggctctagtgggagcacgacatgagtggggacactatatctgatcacattccagtaat 16750255  T
Q  101 cagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaagaattgctaaaagagtatgaacttggtttatgcattg 200  Q
    |||||||||||||||||||||||||  ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||    
T  16750256 cagaaatagttatgaaaacatcgtactagatgttattgaacctcaaggaggtaagaaagctaagaattgct-aaagagtatgaacttagtttatgcactg 16750354  T
Q  201 gaagaagatccgtcacatat 220  Q
    ||||||||||||||||||||    
T  16750355 gaagaagatccgtcacatat 16750374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 25853699 - 25853556
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||| |||    
T  25853699 agtgggggcactatatctgatcacattcatgtaatcagaaatagttatgaaaacatcgtatcagatgttatagaacctcaaggaggtaggaaagct-aga 25853601  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  25853600 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 25853556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 47453700 - 47453831
Alignment:
Q  77 tatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaagaattgctaaaag 176  Q
    ||||||| |||||||| ||||||||| |||||||||||||||||| |||  ||||||||| ||||||||| ||||||||||||||  |||| ||| ||||    
T  47453700 tatatcttatcacatttcagtaatcaaaaatagttatgaaaacattgtactagatgttatagaacctcgaggaggtaagaaagct-ggaatagct-aaag 47453797  T
Q  177 agtatgaacttggtttatgcattggaagaagatc 210  Q
    ||||| |||||||||||| |||||||||||||||    
T  47453798 agtataaacttggtttatacattggaagaagatc 47453831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 10138593 - 10138450
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||||| || ||||||| |||||| || |||| | ||||||| |||    
T  10138593 agtgggggcactatatctgatcatattcatgtaatcagaaatagttatgaaaacatcgtaccaaatgttatagaaccttgaggaggcaggaaagct-aga 10138495  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| ||||||||| |||| ||||||| ||||||||||| ||||    
T  10138494 atagct-aaagagtataaactcggtttatacattggaagaatatcc 10138450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 11812235 - 11812139
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagcta 162  Q
    ||||||| || ||||||||||||||||| ||||| || ||||||||||||||| ||||||| ||||| ||| ||||||| | |||||||||||||||    
T  11812235 agtgggggcattatatctgatcacattctagtaaacataaatagttatgaaaatatcgtatgagatgatatagaacctcaaagaggtaagaaagcta 11812139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 47453580 - 47453643
Alignment:
Q  1 tttctatgtaaatatttacccctttaaataaagaataatgggagttctagtgggagcacgacat 64  Q
    ||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||| ||||||    
T  47453580 tttctatgtaaatatttacccctttaaataaagaatagtgggggcgctagtgggagcgcgacat 47453643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10138699 - 10138641
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagca 58  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |  ||||||||||||    
T  10138699 tttctatgtaaatatttacccctttaaactaaagaatagtgggggcactagtgggagca 10138641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25853790 - 25853732
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagca 58  Q
    ||||||||||||| |||||||||||||| ||||||||| |||| |  ||||||||||||    
T  25853790 tttctatgtaaatctttacccctttaaactaaagaatagtgggggcactagtgggagca 25853732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 25480329 - 25480482
Alignment:
Q  54 gagcacgacatgagtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggta 153  Q
    ||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  25480329 gagcacgacattagtgggggcactatatctgatcacatttaagtaatcagaaatagttatgaaaacatcgtaccagatgttatagaatctcgaagaggta 25480428  T
Q  154 agaaagctaagaattgctaaaagagtatgaacttggtttatgcattggaagaagat 209  Q
    |||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  25480429 agaaagct-agaatagct-aaagagtatgaacttggtttatacattggaagaagat 25480482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 25487935 - 25488088
Alignment:
Q  54 gagcacgacatgagtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggta 153  Q
    ||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  25487935 gagcacgacattagtgggggcactatatctgatcacatttaagtaatcagaaatagttatgaaaacatcgtaccagatgttatagaatctcgaagaggta 25488034  T
Q  154 agaaagctaagaattgctaaaagagtatgaacttggtttatgcattggaagaagat 209  Q
    |||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  25488035 agaaagct-agaatagct-aaagagtatgaacttggtttatacattggaagaagat 25488088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 17972178 - 17972321
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||| |||    
T  17972178 agtgggggcactatatctgatcacattcgtgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggaggtaggaaagct-aga 17972276  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  17972277 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 17972321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 30649483 - 30649340
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||| |||    
T  30649483 agtgggggcactatatctgatcacattcatgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggaggtaggaaagct-aga 30649385  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  30649384 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 30649340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 30654182 - 30654039
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||| |||    
T  30654182 agtgggggcactatatctgatcacattcgtgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggaggtaggaaagct-aga 30654084  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  30654083 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 30654039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 9182223 - 9182366
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||||||||| ||| || |||||||||| ||||||||| |||||| ||||||| |||    
T  9182223 agtgggggcactatatctgatcacattcatgtaatcagaaatagttatgaaaatatcataccagatgttatagaacctcgaggaggtaggaaagct-aga 9182321  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  9182322 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 9182366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30649589 - 30649517
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagcacgacatgagtgggg 72  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |  |||||||||||||||||| |||||||    
T  30649589 tttctatgtaaatatttacccctttaaactaaagaatagtgggggcactagtgggagcacgacattagtgggg 30649517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 28450497 - 28450439
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgt 124  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  28450497 agtgggggcactatatatgatcacattccattaatcagaaatagttatgaaaatatcgt 28450439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 30616222 - 30616168
Alignment:
Q  80 atctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgtt 134  Q
    |||||||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  30616222 atctgatcacattcgagtaatcagaaatagttatgaaaacatcgtaggagatgtt 30616168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 27417694 - 27417799
Alignment:
Q  74 cactatatctgatcacattccagtaatcagaaatagttatgaaaacat------cgtatcagatgttattgaacctcgatgaggtaagaaagctaagaat 167  Q
    ||||| |||||||||| |||  |||||||||||||||||| |||||||      ||||||||||||||| ||||||| | ||||||||||||  ||||||    
T  27417694 cactacatctgatcacgttcgcgtaatcagaaatagttataaaaacattgtacgcgtatcagatgttatagaacctcaaggaggtaagaaag-gaagaat 27417792  T
Q  168 tgctaaa 174  Q
    |||||||    
T  27417793 tgctaaa 27417799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 4239833 - 4239976
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||| |||    
T  4239833 agtgggggcactatatctgatcacattcgtgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggaggtaggaaagct-aga 4239931  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  4239932 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 4239976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 23083388 - 23083531
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    |||||||  |||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||| |||    
T  23083388 agtgggggaactatatctgatcacattcatgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggaggtaggaaagct-aga 23083486  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  23083487 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 23083531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 17023528 - 17023382
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||| ||||||||| ||||||||||||| || |    
T  17023528 agtgggggcactatatctgatcacattccagtaatcagaaatagttatgaaaacattgtacaagatgttatagaacctcgaagaggtaagaaagc-aata 17023430  T
Q  166 attgctaaaagagtatgaa-ct--tggtttatgcattggaagaagatcc 211  Q
    |||| | |||||||||||| ||  |||||||| ||||||||||||||||    
T  17023429 attg-ttaaagagtatgaatcttatggtttatacattggaagaagatcc 17023382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 17554021 - 17553875
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||| ||||||||| ||||||||||||| || |    
T  17554021 agtgggggcactatatctgatcacattccagtaatcagaaatagttatgaaaacattgtacaagatgttatagaacctcgaagaggtaagaaagc-aata 17553923  T
Q  166 attgctaaaagagtatgaa-ct--tggtttatgcattggaagaagatcc 211  Q
    |||| | |||||||||||| ||  |||||||| ||||||||||||||||    
T  17553922 attg-ttaaagagtatgaatcttatggtttatacattggaagaagatcc 17553875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 40127398 - 40127541
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| |||||| || |||||| ||||||| |||    
T  40127398 agtgggggcactatatctgatcacattcatgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaaccttgaggaggtaggaaagct-aga 40127496  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| ||||||||||||||  |||||| ||||||||||| ||||    
T  40127497 atagct-aaagagtatgaactcagtttatacattggaagaatatcc 40127541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 38184105 - 38184243
Alignment:
Q  74 cactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaagaattgctaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||| |||||||||  || ||||||||  |||||||| | |    
T  38184105 cactatatctgatcacattccagtaatcagaaatagttatgaaatcatcgtacgagatgttatagaacctcgaaaagctaagaaag-aaagaattgat-a 38184202  T
Q  174 aagagtatgaact---tggtttatgcattggaagaagatcc 211  Q
    |||||||||||||   |||||||| ||||||||||||||||    
T  38184203 aagagtatgaactttatggtttatacattggaagaagatcc 38184243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 8320133 - 8320279
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| |||||||||||||||||||  |||||||| |||||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||| ||||    
T  8320133 agtgggggcactatatctgatcacatttgagtaatcataaatagttataaaaacatcatatgagatgttatagaacctcgaagaggtaagaaagc-aaga 8320231  T
Q  166 attgctaaaagagtatgaac---ttggtttatgcattggaagaagatcc 211  Q
    | |||| |||||||||||||    |||||||| | ||||||||||||||    
T  8320232 actgct-aaagagtatgaaccttatggtttatacgttggaagaagatcc 8320279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 25369239 - 25369333
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagc 160  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| |||  |||||||| ||||||||| |||||||||||||    
T  25369239 agtgggggcactatatctgatcacatttgagtaatcagaaatagttatgaaaacatcatatgtgatgttatagaacctcgaagaggtaagaaagc 25369333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 34117032 - 34116962
Alignment:
Q  1 tttctatgtaaatatttacccctttaaataaagaataatgggagttctagtgggagcacgacatgagtgggg 72  Q
    |||||||||| |||||||||||||||||||||||||| ||||   || |||||||||||||||| |||||||    
T  34117032 tttctatgtacatatttacccctttaaataaagaatactggggcgtc-agtgggagcacgacattagtgggg 34116962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40127292 - 40127364
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagcacgacatgagtgggg 72  Q
    |||| ||||||||||||||||||||||| ||||||||| |||| |  |||| ||||||||||||| |||||||    
T  40127292 tttcaatgtaaatatttacccctttaaactaaagaatagtgggggcactagcgggagcacgacattagtgggg 40127364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17023633 - 17023559
Alignment:
Q  1 tttctatgtaaatatttacccctttaaataaagaataatgggagttctagtgggagcacgacatgagtggggaca 75  Q
    |||||||| |||||||||||||||||| ||||||||| |||| |  ||||||||  |||||||| ||| ||||||    
T  17023633 tttctatgaaaatatttacccctttaactaaagaatagtgggggcgctagtgggttcacgacattagtagggaca 17023559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17554126 - 17554052
Alignment:
Q  1 tttctatgtaaatatttacccctttaaataaagaataatgggagttctagtgggagcacgacatgagtggggaca 75  Q
    |||||||| |||||||||||||||||| ||||||||| |||| |  ||||||||  |||||||| ||| ||||||    
T  17554126 tttctatgaaaatatttacccctttaactaaagaatagtgggggcgctagtgggttcacgacattagtagggaca 17554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38184022 - 38184063
Alignment:
Q  1 tttctatgtaaatatttacccctttaaataaagaataatggg 42  Q
    |||||||||||||||||||| |||||| ||||||||| ||||    
T  38184022 tttctatgtaaatatttacctctttaactaaagaatagtggg 38184063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 36939017 - 36939160
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||| |||    
T  36939017 agtgggggcactatatctgatcacattcgtgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggaggtaggaaagct-aga 36939115  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  36939116 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 36939160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 39521721 - 39521578
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||| |||    
T  39521721 agtgggggcactatatctgatcacattcatgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggaggtaggaaagct-aga 39521623  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| ||||||||||||||  |||||| ||||||||||| ||||    
T  39521622 atagct-aaagagtatgaactcagtttatacattggaagaatatcc 39521578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 36426935 - 36426792
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| |||||||| |||||||||||  ||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||| |||    
T  36426935 agtgggggcactatatttgatcacattcatgtaatcataaatagttatgaaaacatcgtaccagatgttatagaacctcgaggaggtaggaaagct-aga 36426837  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  36426836 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 36426792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 560060 - 559917
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| |||||| || |||||| ||||||| |||    
T  560060 agtgggggcactatatctgatcacattcgtgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaaccttgaggaggtaggaaagct-aga 559962  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| ||||||||||||||  |||||| |||| |||||| ||||    
T  559961 atagct-aaagagtatgaactcagtttatacatttgaagaatatcc 559917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 26670572 - 26670426
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| | |||     
T  26670572 agtgggggcactatatctgatcacattcatgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaagaggtaagaaaac-aagc 26670474  T
Q  166 attgctaaaagagtatgaa-ct--tggtttatgcattggaagaagatcc 211  Q
    |||| | |||||||||||| ||  |||||||| ||||||||||| ||||    
T  26670473 attg-ttaaagagtatgaatcttatggtttatacattggaagaatatcc 26670426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 26942169 - 26942023
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| | |||     
T  26942169 agtgggggcactatatctgatcacattcatgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaagaggtaagaaaac-aagc 26942071  T
Q  166 attgctaaaagagtatgaa-ct--tggtttatgcattggaagaagatcc 211  Q
    |||| | |||||||||||| ||  |||||||| ||||||||||| ||||    
T  26942070 attg-ttaaagagtatgaatcttatggtttatacattggaagaatatcc 26942023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 41999999 - 41999856
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| |||||||||||||||| |||  |||||||||||||||||||||||||| ||| |||||||||| ||||| ||| |||||| ||||||| |||    
T  41999999 agtgggggcactatatctgatcactttcatgtaatcagaaatagttatgaaaacattgtaccagatgttatagaaccacgaggaggtaggaaagct-aga 41999901  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||| ||||||  ||||||| ||||||||||| ||||    
T  41999900 atagct-aaagagcatgaacacggtttatacattggaagaatatcc 41999856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 66 - 191
Target Start/End: Complemental strand, 9911915 - 9911792
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||| |||||||||||||| |||||||| ||||||||| |||||||||  || ||||||||| |||| | || |||||||||||||| |||    
T  9911915 agtgggggcactacatctgatcacattcaagtaatcataaatagttacgaaaacatcaaatgagatgttatagaactttgaagaggtaagaaagct-aga 9911817  T
Q  166 attgctaaaagagtatgaacttggtt 191  Q
    |||||| |||||||||||||||||||    
T  9911816 attgct-aaagagtatgaacttggtt 9911792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42000105 - 42000033
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagcacgacatgagtgggg 72  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |  |||||||||||||||||| |||||||    
T  42000105 tttctatgtaaatatttacccctttaaactaaagaatagtgggggcactagtgggagcacgacattagtgggg 42000033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 26670678 - 26670614
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagcacgacat 64  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |  ||||||||||||| ||||    
T  26670678 tttctatgtaaatatttacccctttaaactaaagaatagtgggggcactagtgggagcacaacat 26670614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 26942275 - 26942211
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagcacgacat 64  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |  ||||||||||||| ||||    
T  26942275 tttctatgtaaatatttacccctttaaactaaagaatagtgggggcactagtgggagcacaacat 26942211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36938911 - 36938983
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagcacgacatgagtgggg 72  Q
    |||||||||||||||||||||||  ||| ||||||||| |||| |  |||||||||||||||||| |||||||    
T  36938911 tttctatgtaaatatttacccctcgaaactaaagaatagtgggggcactagtgggagcacgacattagtgggg 36938983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39521827 - 39521763
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagcacgacat 64  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |  ||||||||||||| ||||    
T  39521827 tttctatgtaaatatttacccctttaaactaaagaatagtgggggcactagtgggagcacaacat 39521763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 36427029 - 36426977
Alignment:
Q  12 atatttacccctttaaataaagaataatgggagttctagtgggagcacgacat 64  Q
    |||||||||||||||| ||||||||| |||| |  ||||||||||||| ||||    
T  36427029 atatttacccctttaactaaagaatagtgggggcactagtgggagcacaacat 36426977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 33465857 - 33466000
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||| |||  |||| ||||||||||||| ||||    
T  33465857 agtgggggcactatatctgatcacattccaataatcagaaatagttatgaaaacatcgtacgagatgttatagaaattcgaagaggtaagaaagc-aaga 33465955  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    |||| | |||||||||||||||||||||| ||||||||||| ||||    
T  33465956 attg-ttaaagagtatgaacttggtttatacattggaagaatatcc 33466000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 206
Target Start/End: Original strand, 37261367 - 37261505
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||| ||||||| |||    
T  37261367 agtgggggcactatatctgatcatattcatgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaaccttgatgaggtaggaaagct-aga 37261465  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaa 206  Q
    || ||| |||||||||||||| ||||||| |||||||||||    
T  37261466 atagct-aaagagtatgaactcggtttatacattggaagaa 37261505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 31272064 - 31271921
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||| ||||  ||||||| ||||||||||||||||||||||  ||||||||| |||||| ||||||||| ||||||| |||    
T  31272064 agtgggggcactatatctgatcatattcatgtaatcaaaaatagttatgaaaacatcgtactagatgttatagaaccttgatgaggtaggaaagct-aga 31271966  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  31271965 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 31271921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 12877613 - 12877498
Alignment:
Q  74 cactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaagaattgctaa 173  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| | |||||||||||||| ||||||||| |    
T  12877613 cactgtatctgatcagattccagtaatcagaaatagttatgaaaacatcatatgagatgttatagaacctcaaagaggtaagaaagct-agaattgct-a 12877516  T
Q  174 aagagtatgaacttggtt 191  Q
    | ||||||||||||||||    
T  12877515 atgagtatgaacttggtt 12877498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 39318946 - 39318870
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacc 142  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||| |||||    
T  39318946 agtgggggaactatatctgatcacattctagtaatcagaaatagttatgaaaacatcatacgagatgttatagaacc 39318870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 19105279 - 19105180
Alignment:
Q  113 tgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaagaattgctaaaagagtatgaac---ttggtttatgcattggaagaagat 209  Q
    |||||||||||||  ||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||| ||    || ||||| ||||||||||||||    
T  19105279 tgaaaacatcgtacaagatgttatagaacctcgaagaggtaagaaagc-aagaattgct-aaagagtatggaccttatgctttatacattggaagaagat 19105182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31272153 - 31272095
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagca 58  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |  ||||||||||||    
T  31272153 tttctatgtaaatatttacccctttaaactaaagaatagtgggggcactagtgggagca 31272095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 32222587 - 32222624
Alignment:
Q  5 tatgtaaatatttacccctttaaataaagaataatggg 42  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  32222587 tatgtaaatatttacccctttaaataaagaatagtggg 32222624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 19105413 - 19105343
Alignment:
Q  1 tttctatgtaaatatttacccctttaaataaagaataatgggagttctagtgggagcacgacatgagtgggg 72  Q
    ||||||||||||||||||  ||||||| ||||||||| |||| |  ||||||||||||||| || |||||||    
T  19105413 tttctatgtaaatatttaatcctttaactaaagaatagtggg-gcactagtgggagcacgaaattagtgggg 19105343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37261278 - 37261336
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagca 58  Q
    |||||||||||||||||||||||||||| |||||||||  ||| |  ||||||||||||    
T  37261278 tttctatgtaaatatttacccctttaaactaaagaatagcgggggcactagtgggagca 37261336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 41815328 - 41815294
Alignment:
Q  89 cattccagtaatcagaaatagttatgaaaacatcg 123  Q
    |||| ||||||||||||||||||||||||||||||    
T  41815328 catttcagtaatcagaaatagttatgaaaacatcg 41815294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 3686680 - 3686537
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||| |||    
T  3686680 agtgggggcactatatctgatcacattcgtgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcgaggaggtaggaaagct-aga 3686582  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  3686581 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 3686537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 18470508 - 18470365
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||| ||||||| |||    
T  18470508 agtgggggcactatatctgatcacattcatgtaatcagaaatagttatgaaaacatcgtaccagatgttatagaacctcaaggaggtaggaaagct-aga 18470410  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| ||||||||||||||  | |||| ||||||||||| ||||    
T  18470409 atagct-aaagagtatgaactcagattatacattggaagaatatcc 18470365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 23662921 - 23663064
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||||||||||||||| ||||  ||||||| ||||||||||||||||||||||  ||||||||| |||||| ||||||||| ||||||| |||    
T  23662921 agtgggggcactatatctgatcatattcatgtaatcaaaaatagttatgaaaacatcgtactagatgttatagaaccttgatgaggtaggaaagct-aga 23663019  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  23663020 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 23663064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 8886520 - 8886377
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| |||||||||||||||| |||  ||||||| |||||||||||||||||| ||| |||||||||| ||||| ||| |||||| ||||||| |||    
T  8886520 agtgggggcactatatctgatcactttcatgtaatcataaatagttatgaaaacattgtaccagatgttatagaaccacgaggaggtaggaaagct-aga 8886422  T
Q  166 attgctaaaagagtatgaacttggtttatgcattggaagaagatcc 211  Q
    || ||| |||||||||||||| ||||||| ||||||||||| ||||    
T  8886421 atagct-aaagagtatgaactcggtttatacattggaagaatatcc 8886377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 38206114 - 38206205
Alignment:
Q  67 gtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaa 158  Q
    |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||| | |||||||||||    
T  38206114 gtgggggcactacatttgatcacattccagtaatcagaaatagttatgaaaacatcgtacaagatgttatagaacctcaaagaggtaagaaa 38206205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 24755990 - 24756082
Alignment:
Q  68 tggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagc 160  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||||||| ||   |||||||| ||||||||| |||||||||||||    
T  24755990 tgggggcagtatatctgatcacatttcagtaatcagaaatagttatgaaaacatcatacgtgatgttatagaacctcgaagaggtaagaaagc 24756082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 24764987 - 24765079
Alignment:
Q  68 tggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagc 160  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||||||| ||   |||||||| ||||||||| |||||||||||||    
T  24764987 tgggggcagtatatctgatcacatttcagtaatcagaaatagttatgaaaacatcatacgtgatgttatagaacctcgaagaggtaagaaagc 24765079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 12967344 - 12967398
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaaca 120  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  12967344 agtgggggcactatatctgatcacattccagtaatcataaatagttatgaaaaca 12967398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3686786 - 3686714
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagcacgacatgagtgggg 72  Q
    |||||||||||||||||||||||| ||| ||||||||| |||| |  |||||||||||||||||| |||||||    
T  3686786 tttctatgtaaatatttaccccttgaaactaaagaatagtgggggcactagtgggagcacgacattagtgggg 3686714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 18470602 - 18470542
Alignment:
Q  12 atatttacccctttaaataaagaataatgggagttctagtgggagcacgacatgagtgggg 72  Q
    |||||||||||||||| ||||||||| |||| |  |||||||||||||||||| |||||||    
T  18470602 atatttacccctttaactaaagaatagtgggggcactagtgggagcacgacattagtgggg 18470542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23662832 - 23662890
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagca 58  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |  ||||||||||||    
T  23662832 tttctatgtaaatatttacccctttaaactaaagaatagtgggggcactagtgggagca 23662890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 12114318 - 12114373
Alignment:
Q  107 tagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagcta 162  Q
    |||||||||||| ||||||| ||||||||| ||||||| | ||||||| |||||||    
T  12114318 tagttatgaaaatatcgtatgagatgttatagaacctcaaagaggtaataaagcta 12114373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12967239 - 12967280
Alignment:
Q  1 tttctatgtaaatatttacccctttaaataaagaataatggg 42  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||    
T  12967239 tttctatataaatatttacccatttaaataaagaatagtggg 12967280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 211
Target Start/End: Complemental strand, 81644 - 81500
Alignment:
Q  68 tggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaagaat 167  Q
    |||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| |||  ||||||||| ||||||||| ||||||||||||| ||||||    
T  81644 tggggacattatatctgatcatatttcagtaattagaaatagttatgaaaacattgtacgagatgttatagaacctcgaagaggtaagaaagc-aagaat 81546  T
Q  168 tgctaaaagagtatgaac---ttggtttatgcattggaagaagatcc 211  Q
    |||| |||||||||| ||    |||||||| ||||||||||||||||    
T  81545 tgct-aaagagtatggaccttgtggtttatacattggaagaagatcc 81500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 61884 - 61790
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagc 160  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| |||  |||||||| ||||||||| |||||||||||||    
T  61884 agtgggggcactatatctgatcacatttgagtaatcagaaatagttatgaaaacatcatatgtgatgttatagaacctcgaagaggtaagaaagc 61790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 66086 - 65992
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagc 160  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| ||   |||||||| ||||||||| |||||||||||||    
T  66086 agtgggggcactatatctgatcacatttgagtaatcagaaatagttatgaaaacatcatacgtgatgttatagaacctcgaagaggtaagaaagc 65992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 10389876 - 10389964
Alignment:
Q  74 cactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagcta 162  Q
    |||||||||| ||||| |||||||||||||||||||||||  ||||||||||| ||||||||| ||||||| | |||||||||||||||    
T  10389876 cactatatctaatcactttccagtaatcagaaatagttatctaaacatcgtataagatgttatagaacctcaaagaggtaagaaagcta 10389964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 174
Target Start/End: Complemental strand, 21667853 - 21667746
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaaga 165  Q
    ||||||| ||| ||||||||||||||| || |||||||||||||||||||  |||| |||  ||||||||| ||||||||| || ||| ||||| |||||    
T  21667853 agtgggggcacaatatctgatcacatttcaataatcagaaatagttatgagtacattgtacgagatgttatagaacctcgaagaagtacgaaag-taaga 21667755  T
Q  166 attgctaaa 174  Q
    |||||||||    
T  21667754 attgctaaa 21667746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 30492834 - 30492779
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagttatgaaaacat 121  Q
    |||||||||||||  ||| |||||| ||||||||||||||||||| ||||||||||    
T  30492834 agtggggacactacctctaatcacactccagtaatcagaaatagtgatgaaaacat 30492779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 15984779 - 15984696
Alignment:
Q  75 actatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaag 159  Q
    ||||||||| ||||||||  |||||| | ||||||||||| ||||| ||||| ||||||||| |||||| ||  |||||||||||    
T  15984779 actatatcttatcacattatagtaataaaaaatagttatg-aaacaacgtatgagatgttatagaaccttgaaaaggtaagaaag 15984696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21667966 - 21667931
Alignment:
Q  1 tttctatgtaaatatttacccctttaaataaagaata 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  21667966 tttctatgtaaatatttacccc-ttaaataaagaata 21667931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 12796289 - 12796393
Alignment:
Q  85 atcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgttattgaacctcgatgaggtaagaaagctaagaattgctaaaagagtatgaa 184  Q
    ||||||||| ||||||||||||||||||||||| |||||||  ||||||||| ||||||| | ||||||||||||  |||||||| | ||||||||||||    
T  12796289 atcacattcgagtaatcagaaatagttatgaaagcatcgtaggagatgttatagaacctcaaagaggtaagaaag-aaagaattg-ttaaagagtatgaa 12796386  T
Q  185 cttggtt 191  Q
    |||||||    
T  12796387 cttggtt 12796393  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16836238 - 16836302
Alignment:
Q  1 tttctatgtaaatatttacccctttaaa-taaagaataatgggagttctagtgggagcacgacat 64  Q
    |||||||||||||||||||||||||||| ||||||||| |||| |  ||||||||||||| ||||    
T  16836238 tttctatgtaaatatttacccctttaaactaaagaatagtgggggcactagtgggagcacaacat 16836302  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 16836344 - 16836388
Alignment:
Q  66 agtggggacactatatctgatcacattccagtaatcagaaatagt 110  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||    
T  16836344 agtgggggcactatatctgatcacattcatgtaatcagaaatagt 16836388  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 15998134 - 15998176
Alignment:
Q  77 tatatctgatcacattccagtaatcagaaatagttatgaaaac 119  Q
    ||||||||||||||||||| ||||||||||||  |||||||||    
T  15998134 tatatctgatcacattccaataatcagaaataagtatgaaaac 15998176  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 17285353 - 17285415
Alignment:
Q  73 acactatatctgatcacattccagtaatcagaaatagttatgaaaacatcgtatcagatgtta 135  Q
    |||||| | ||||||||| ||||||||||||| ||||| ||||||||||| || || ||||||    
T  17285353 acactacacctgatcacactccagtaatcagagatagtgatgaaaacatcataacaaatgtta 17285415  T

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Target: scaffold0060 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 49542 - 49585
Alignment:
Q  77 tatatctgatcacattccagtaatcagaaatagttatgaaaaca 120  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  49542 tatatctgatcacatttcagtaatcagaaatagttatgaaaaca 49585  T

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