View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14543_high_10 (Length: 216)

Name: NF14543_high_10
Description: NF14543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14543_high_10
NF14543_high_10
[»] chr5 (6 HSPs)
chr5 (102-200)||(10220565-10220663)
chr5 (48-114)||(13853227-13853294)
chr5 (97-202)||(13853311-13853404)
chr5 (45-98)||(10221843-10221897)
chr5 (1-46)||(13853153-13853198)
chr5 (1-43)||(10221940-10221982)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 10220663 - 10220565
Alignment:
Q  102 gcatgacatgacatattggaaagccaagttgcttcatcatgaatattatggtatcacactatgttatgaatttgcaatagcataaaaactgggggaatg 200  Q
    |||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10220663 gcatgatatgacatattggaaagccaagtttcttaatcatgaatattatggtatcacactatggtatgaatttgcaatagcataaaaactgggggaatg 10220565  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 13853227 - 13853294
Alignment:
Q  48 tttcttattaacattggatatggaccagaaaa-aggaggattgatccttacataagcatgacatgaca 114  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  13853227 tttcttattaacattggatatggacaagaaaagaggaggattgatccttacataagcatgacatgaca 13853294  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 13853311 - 13853404
Alignment:
Q  97 cataagcatgacatgacatattggaaagccaagttgcttcatcatgaatattatggtatcacactatgttatgaatttgcaatagcataaaaactggggg 196  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||            | |||||||||||||||||||||||||||||||    
T  13853311 cataagcatgacatgacatattggaaaaccaagttgcttaatcatgaatattatg------------ggtatgaatttgcaatagcataaaaactggggg 13853398  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 10221897 - 10221843
Alignment:
Q  45 aattttcttattaacattggatatggaccagaaaa-aggaggattgatccttaca 98  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  10221897 aattttcttattaacattggatattgaccagaaaagaggaggattgatccttaca 10221843  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13853153 - 13853198
Alignment:
Q  1 taatcaataggttgtaaaaagttgaaataagtatacttaatgttaa 46  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  13853153 taatcaataggttgtaaaaagttgaaataagcatacttaatgttaa 13853198  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10221982 - 10221940
Alignment:
Q  1 taatcaataggttgtaaaaagttgaaataagtatacttaatgt 43  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  10221982 taatcaatagattgtaaaaagttgaaataagcatacttaatgt 10221940  T

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