View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14543_high_3 (Length: 462)
Name: NF14543_high_3
Description: NF14543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14543_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 69 - 447
Target Start/End: Original strand, 39511812 - 39512190
Alignment:
| Q |
69 |
aattaggattagagagagtggaggtttcatggttttaagtaactacataaaattcgttacaaaggaaatttcaaagtggtggggttacatattaaatgag |
168 |
Q |
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| T |
39511812 |
aattaggattagag--agtggaggtttcatggttttaagtaactacataaaattcgttacaaaggaaatttcaaagtggtgggtttacatattaaatgag |
39511909 |
T |
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| Q |
169 |
taacctagctaatctttcctcacactcaccgccaaaatgaggtagtgaagaagaaac--atacaagtatgttgaacttaagcttaccttctagtaaaaca |
266 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |
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| T |
39511910 |
taacctagctaatctgtcctcacactcaccaccaaaatgaggcagtgaagaagaaacaaatacaagtttgttgaacttaagcttgccttctagtaaaaca |
39512009 |
T |
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| Q |
267 |
gttaacacgatacattccatagaactcctaaaatctctggctcaaaattaannnnnnnatcaaacaacctattcactttgtccttaattataatttataa |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39512010 |
gttaacacgatacattccatagaactcctaaaatctctggctcaaaattattttttttatcaaaccacctattcactttgtccttaattataatttataa |
39512109 |
T |
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| Q |
367 |
agcgtacatttcacttttctgtcgagttcatcacggaagtcttcaaacttccaacttgaaaattggatgttattgtctgtg |
447 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39512110 |
agcgtacatttcacttttttgtcgagttcatcacggaagtcttcaaacttccaacttgaaaattggatgttattgtctgtg |
39512190 |
T |
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