View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14543_high_5 (Length: 367)
Name: NF14543_high_5
Description: NF14543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14543_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 184 - 333
Target Start/End: Complemental strand, 10715101 - 10714952
Alignment:
| Q |
184 |
ttaatatgactttgttcaagatcatcccctcctctccgcctaaaaagattgtaacatcatgcagcaacataatgaaaagatcacttcattgcgatcaaat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10715101 |
ttaatatgactttgttcaagatcatcccctcctctccgcctaaaaagattgtaacatcatgcagcaacataatgaaaagatcacttcattgagatcaaat |
10715002 |
T |
|
| Q |
284 |
atgcataatatatcagcaaagtaatagttgccatttctcgtatatcctat |
333 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10715001 |
atgcataatatatcaacaaagtaatagttgccatttctcgtatatcctat |
10714952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10715973 - 10715828
Alignment:
| Q |
1 |
ctaggtatggcctcagagactactataaaatttgaaaaacataaactccataaaatatggtgatatagaactaaaaaattcacacaattataacagcatg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10715973 |
ctaggtatggcctcagagacta---taaaatttgaaaaacataaactccataaaatatggtgatatagaactaaaaaattcacacaattataacagcatg |
10715877 |
T |
|
| Q |
101 |
gtttatatgcataaacggttgaaacataatacatatatattcactgtag |
149 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10715876 |
gtttatatgcatacacggttgaaacataatacatatatattcactgtag |
10715828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 10715396 - 10715363
Alignment:
| Q |
150 |
aagtttcaaattgttttaaaaaatatcctgattg |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10715396 |
aagtttcaaattgttttaaaaaatatcctgattg |
10715363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 5452626 - 5452540
Alignment:
| Q |
184 |
ttaatatgactttgttcaagatcatcccctcctctccgcctaaaaa-gattgtaacatcatgcagcaacataatgaaaagatcactt |
269 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5452626 |
ttaatatgactttgctcaagatcatcccctcctctcctcctaaaaatgactgtaacatcctgcagcaacataatgaaaagatcactt |
5452540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 12151436 - 12151505
Alignment:
| Q |
278 |
tcaaatatgcataatatatcagcaaagtaatagttgccatttctcgtatatcctattcattaatgtacgcat |
349 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || | ||||| ||||| ||||||||| | ||||||| |
|
|
| T |
12151436 |
tcaaatatgcataatatatcaacaaagtaatagtcgcaacttctc--atatcttattcattagtatacgcat |
12151505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 12151016 - 12151081
Alignment:
| Q |
4 |
ggtatggcctcagagactactataaaatttgaaaaacataaactccataaaatatggtgatatagaa |
70 |
Q |
| |
|
||||||| || ||||||||||| ||| || |||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
12151016 |
ggtatggtctgagagactactacaaa-ttcgaaaaacataaacttcataaaagatcgtgatatagaa |
12151081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 39212501 - 39212469
Alignment:
| Q |
46 |
ctccataaaatatggtgatatagaactaaaaaa |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39212501 |
ctccataaaatatggtgatatagaactaaaaaa |
39212469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University