View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14543_high_8 (Length: 248)
Name: NF14543_high_8
Description: NF14543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14543_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 2606591 - 2606373
Alignment:
| Q |
14 |
tcaagaggctccataatcatttagtgttatgttaatattaaaaatttagtatcgtatgtcgataacgtattaaaatatattcaacatagtgttcagctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2606591 |
tcaagaggctccataatcatttagtgttatgttaatattacaaatttagtatcgtatgtcgataacgtattaaaatatattcaacatagtgtccagctta |
2606492 |
T |
|
| Q |
114 |
actcaaagctctattgggttttctatctgatttctcttttttgctgaggtaagctatgagtttacaactccatagaggttttattgcagtttctttagat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2606491 |
actcaaagctctattgggttttctatctgatctctcttttttgctgaggtaatctatgagtttacaactccatagaggttttattgcagtttctttagat |
2606392 |
T |
|
| Q |
214 |
ctttattgcgtgtataagc |
232 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2606391 |
ctttattgcgtgtataagc |
2606373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 35 - 232
Target Start/End: Complemental strand, 2600186 - 2599991
Alignment:
| Q |
35 |
tagtgttatgttaatattaaaaatttagtatcgtatgtcgataacgtattaaaatatattcaacatagtgttcagcttaactcaaagctctattgggttt |
134 |
Q |
| |
|
||||||||| |||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||| | || |||||||||||||||| ||||| | |
|
|
| T |
2600186 |
tagtgttattttaataatactaatttagtaccgtatgtcgataatgtattaaaatatattcaacatagtatccaacttaactcaaagctct--tgggtct |
2600089 |
T |
|
| Q |
135 |
tctatctgatttctcttttttgctgaggtaagctatgagtttacaactccatagaggttttattgcagtttctttagatctttattgcgtgtataagc |
232 |
Q |
| |
|
||||||||| || |||||| || |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
2600088 |
tctatctgacttatcttttatgttgaggtaaactatgagtttacaactccatagaggttttattgcagttgctatagatctttattgcctgtataagc |
2599991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University