View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14543_low_1 (Length: 535)
Name: NF14543_low_1
Description: NF14543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14543_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 94 - 373
Target Start/End: Complemental strand, 33183259 - 33182990
Alignment:
| Q |
94 |
tgttccgttgagtttgaatgttagaggtggcatctcaagatatgnnnnnnnnnnnnttccgctctttgaatttgttactatcaaatactctctttt-aga |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33183259 |
tgttccgttgagtttgaatgttagaggtggcatctcaagatatggtgtgtgtgt--tcccgctctttgaatttgttactatcaaatactctctttttaga |
33183162 |
T |
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| Q |
193 |
aaggtaattcagtcaaaagttatgaaggtttaaacaatattttaaaagtcaagtttacaaaatatattcgag-atcctcgtttcttgtgttttcttgcgc |
291 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
33183161 |
aaggtaattcggtcaaaagttatgaaggtttaaacaatattttaaaagtcaagtttacaaaatatattcgagaatcctcgtttcttgt----------gc |
33183072 |
T |
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| Q |
292 |
tttcaatactctcatgtcaagaataagttgtttatcatagttgaatcatatttgtaggttaaggagtatgtgtgtatatgta |
373 |
Q |
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| T |
33183071 |
tttcaatactctgagatcaagaataagttgtttatcatagttgaatcatatttgtaggttaaggagtatatgtgtatatgta |
33182990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33183322 - 33183261
Alignment:
| Q |
1 |
atttttattactatttgcaactacatcatgatgatgtcattgtttagtattctttggaatgg |
62 |
Q |
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| T |
33183322 |
atttttattactatttgcaactacatcatgatgatgtcattgtttagtattctttggaatgg |
33183261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 480 - 517
Target Start/End: Complemental strand, 33178686 - 33178649
Alignment:
| Q |
480 |
atattgcattgtatcctacaatcgtctaatgtaattgt |
517 |
Q |
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| T |
33178686 |
atattgcactgtatcctacaatcgtctaatgtaattgt |
33178649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 152 - 373
Target Start/End: Complemental strand, 23360678 - 23360454
Alignment:
| Q |
152 |
ccgctctttgaatttgttactatcaaa-tactctcttttagaaa-ggtaattcagtcaaaagttatgaaggtttaaacaatattttaaaagtcaagttta |
249 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||| |||||| | |||||||| || |||| |||||||||||||||||||||||||||| |
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| T |
23360678 |
ccgctctttgaatttgttactatcaaaatactctctttttaaaatggtaatcctgtcaaaagacataaaggattaaacaatattttaaaagtcaagttta |
23360579 |
T |
|
| Q |
250 |
caaaatatattcgag-atcctcgtttcttgtgttttcttgcgctttcaatactctcatgtcaagaataagttgtttatcatagttgaatcatatttgtag |
348 |
Q |
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||||||||| ||||| ||| || ||||||||||||||| ||||||||||||| | | ||||||||||||| |||| |||||| ||||||||||| | |
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| T |
23360578 |
caaaatataatcgagaatcatcatttcttgtgttttctcacgctttcaatacttcgaggacaagaataagttgcttatgatagtttgatcatatttgtgg |
23360479 |
T |
|
| Q |
349 |
gttaaggagtatgtgtgtatatgta |
373 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
23360478 |
gtcaaggagtatgtgtgtatatgta |
23360454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 23590376 - 23590475
Alignment:
| Q |
272 |
tttcttgtgttttcttgcgctttcaatactctcatgtcaagaataagttgtttatcatagttgaatcatatttgtaggttaaggagtatgtgtgtatatg |
371 |
Q |
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|||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
23590376 |
tttcttgtgttttcttgcgccatcaatactcaaaggtcaagaataagttgtttatcatagtt-catcatatttgtaggttaaggagtttgtgtatatatg |
23590474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 509
Target Start/End: Original strand, 23590583 - 23590612
Alignment:
| Q |
480 |
atattgcattgtatcctacaatcgtctaat |
509 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23590583 |
atattgcattgtatcctacaatcgtctaat |
23590612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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