View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14543_low_10 (Length: 264)

Name: NF14543_low_10
Description: NF14543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14543_low_10
NF14543_low_10
[»] chr7 (5 HSPs)
chr7 (88-253)||(2600262-2600421)
chr7 (7-96)||(2600606-2600695)
chr7 (45-91)||(10420720-10420766)
chr7 (7-117)||(29469783-29469892)
chr7 (7-79)||(47849551-47849623)
[»] chr8 (9 HSPs)
chr8 (7-117)||(10615572-10615682)
chr8 (7-117)||(37867864-37867974)
chr8 (15-117)||(10614979-10615081)
chr8 (16-109)||(31079603-31079696)
chr8 (51-117)||(8849360-8849426)
chr8 (7-117)||(11232226-11232335)
chr8 (7-117)||(37868104-37868214)
chr8 (7-117)||(37868380-37868489)
chr8 (7-93)||(37868615-37868701)
[»] chr4 (7 HSPs)
chr4 (6-117)||(12005500-12005612)
chr4 (27-105)||(11053933-11054011)
chr4 (40-93)||(26030279-26030332)
chr4 (45-109)||(33108057-33108121)
chr4 (4-57)||(21646294-21646347)
chr4 (12-117)||(30529963-30530068)
chr4 (47-107)||(7926510-7926570)
[»] chr2 (2 HSPs)
chr2 (45-115)||(33381022-33381092)
chr2 (7-79)||(15988193-15988265)
[»] chr3 (3 HSPs)
chr3 (7-94)||(13574953-13575040)
chr3 (45-111)||(45828194-45828260)
chr3 (7-117)||(13574716-13574826)
[»] chr5 (2 HSPs)
chr5 (7-93)||(25436167-25436253)
chr5 (45-95)||(27903380-27903430)
[»] scaffold0519 (1 HSPs)
scaffold0519 (7-117)||(2094-2203)
[»] chr6 (2 HSPs)
chr6 (51-117)||(6311992-6312058)
chr6 (18-95)||(27993449-27993525)
[»] chr1 (3 HSPs)
chr1 (12-70)||(10991810-10991868)
chr1 (45-117)||(12376507-12376579)
chr1 (7-79)||(52907364-52907436)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 88 - 253
Target Start/End: Complemental strand, 2600421 - 2600262
Alignment:
Q  88 ttaacacatcacctcacgaccagcactattatacctgtataatattttatagagatgtgagtcttacct--atctccttaagccataactcaaaccagtt 185  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||   ||||  |||||||||| ||||||||||||||||||    
T  2600421 ttaacacatcacctcacgaccaacactattatacctgtataatattttatagagatgttagt---acctccatctccttaacccataactcaaaccagtt 2600325  T
Q  186 gagctatccaattcctgctaaatatgtcaatcttatacaagcttaaagaatcttgtctcgtaagtgat 253  Q
    |||||||     |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2600324 gagctat-----tcctactaaatatgtcaatcttatacaaccttaaagaatcttgtctcgtaagtgat 2600262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 2600695 - 2600606
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacat 96  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  2600695 cacagaaccggtttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtgagacactttaacacat 2600606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 10420720 - 10420766
Alignment:
Q  45 ataaacacatgttcatgccatattttctccgatgtaagagtctttaa 91  Q
    ||||||||||||||||| |||||||| | |||||||||| |||||||    
T  10420720 ataaacacatgttcatgtcatatttttttcgatgtaagactctttaa 10420766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 29469892 - 29469783
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacga 106  Q
    |||| ||||||||||||||||||| ||| ||| || | ||||||||||  ||| ||||| |  | ||||||||  || || |||||||| | ||||||||    
T  29469892 cacaaaaccggcttgtaaggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactc-ttaacacaccccctcacga 29469794  T
Q  107 ccagcactatt 117  Q
    |||||||||||    
T  29469793 ccagcactatt 29469783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 47849623 - 47849551
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgt 79  Q
    |||| |||||| |||| ||||||| ||| |||  | | ||||||||||||||||||||| |||| ||||||||    
T  47849623 cacaaaaccgggttgtgaggtgaggattgccccaacttataaacacatgttcatgccatcttttatccgatgt 47849551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 10615682 - 10615572
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacga 106  Q
    |||| ||||| ||||||||| ||| ||| |||||| | ||||||||||||||||| |||||||| | ||||||| || |||||||||||   ||||||||    
T  10615682 cacaaaaccgacttgtaaggagaggattaccctcacttataaacacatgttcatgtcatattttgttcgatgtaggactctttaacacacaccctcacga 10615583  T
Q  107 ccagcactatt 117  Q
    | |||||||||    
T  10615582 ctagcactatt 10615572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 37867864 - 37867974
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacga 106  Q
    |||| ||||||||||| ||||||||||| ||| || | |||||||| |||||| | |||  ||| |||||||| ||| |||||||||||   ||||||||    
T  37867864 cacaaaaccggcttgtgaggtgagaattgcccccactaataaacacgtgttcaggtcatcatttgtccgatgttagactctttaacacacaccctcacga 37867963  T
Q  107 ccagcactatt 117  Q
    ||| |||||||    
T  37867964 ccaacactatt 37867974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 10614979 - 10615081
Alignment:
Q  15 cggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacgaccagcact 114  Q
    |||||||| ||||||  ||| ||| ||||  |||||||||||||||| |||||||| ||||||||  || |||||||||||   |||||| |||| ||||    
T  10614979 cggcttgtgaggtgaagattacccccatttgtaaacacatgttcatgtcatattttatccgatgtgggactctttaacacacaccctcacaaccaacact 10615078  T
Q  115 att 117  Q
    |||    
T  10615079 att 10615081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 31079603 - 31079696
Alignment:
Q  16 ggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacgacca 109  Q
    ||||||| ||||||| ||| ||  || | ||||||||||||||| ||||||||||  |||||||  || ||||||||||| | |||||||||||    
T  31079603 ggcttgtgaggtgaggattgcctccacttataaacacatgttcaagccatattttacccgatgtgggactctttaacacacctcctcacgacca 31079696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 8849426 - 8849360
Alignment:
Q  51 acatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacgaccagcactatt 117  Q
    ||||| |||||||||||||| || ||| | ||| ||||||||||| | ||||||||||| |||||||    
T  8849426 acatggtcatgccatattttgtctgatttgagactctttaacacaccccctcacgaccaacactatt 8849360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 11232226 - 11232335
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacga 106  Q
    |||| ||||||||||||||||||| ||| ||| || | ||||||||||  ||| ||||| |  | ||||||||  || || |||||||| | ||||||||    
T  11232226 cacaaaaccggcttgtaaggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactc-ttaacacaccccctcacga 11232324  T
Q  107 ccagcactatt 117  Q
    |||||||||||    
T  11232325 ccagcactatt 11232335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 37868104 - 37868214
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacga 106  Q
    |||| |||||||||||  |||||| ||| ||| || | |||||||| |||||| |||||  ||| || ||||| ||| |||||||||||   ||||||||    
T  37868104 cacaaaaccggcttgtgtggtgaggattgcccccactaataaacacgtgttcaggccatcatttgtctgatgttagactctttaacacacaccctcacga 37868203  T
Q  107 ccagcactatt 117  Q
    ||| |||||||    
T  37868204 ccaacactatt 37868214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 37868380 - 37868489
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacga 106  Q
    |||| ||||||||||| ||||||| ||| ||| || | |||||||| |||||| |||||  ||| ||||||||  || ||||||||||  | ||||||||    
T  37868380 cacaaaaccggcttgtgaggtgaggattgcccccactaataaacacgtgttcaggccatcatttatccgatgttcgactctttaacac-ccccctcacga 37868478  T
Q  107 ccagcactatt 117  Q
    |||||| ||||    
T  37868479 ccagcaatatt 37868489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 37868615 - 37868701
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaaca 93  Q
    |||| |||| |||||| ||||||| ||| ||| |||| ||||||||||||||| |||||  ||| ||||||||  || |||||||||    
T  37868615 cacaaaaccagcttgtgaggtgaggattgcccccattaataaacacatgttcaggccatcatttgtccgatgtgggactctttaaca 37868701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 12005500 - 12005612
Alignment:
Q  6 tcacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacaca-tcacctcac 104  Q
    ||||| ||||||||||| ||||||| ||| ||| || | || |||| |||||||||||||||||| ||||||||  || |||||||||||  | ||||||    
T  12005500 tcacaaaaccggcttgtgaggtgaggattgcccccacttattaacaaatgttcatgccatattttgtccgatgtgggactctttaacacacacccctcac 12005599  T
Q  105 gaccagcactatt 117  Q
    |||||||||||||    
T  12005600 gaccagcactatt 12005612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 11053933 - 11054011
Alignment:
Q  27 tgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacg 105  Q
    |||| ||| |||||| |||||| |||||||||||| ||| | ||||| ||||||||| ||||||||||| ||| |||||    
T  11053933 tgaggattgccctcaatcataagcacatgttcatgtcatctcttctctgatgtaagactctttaacacaccacttcacg 11054011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 26030332 - 26030279
Alignment:
Q  40 cattcataaacacatgttcatgccatattttctccgatgtaagagtctttaaca 93  Q
    |||| |||||||||||||||||||||||||| |||||||||  | |||||||||    
T  26030332 catttataaacacatgttcatgccatattttatccgatgtagaattctttaaca 26030279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 33108121 - 33108057
Alignment:
Q  45 ataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacgacca 109  Q
    ||||||||||||| ||| |||||||| | |||||||||| ||||||| ||| || ||||||||||    
T  33108121 ataaacacatgtttatgtcatattttgttcgatgtaagactctttaatacaccatctcacgacca 33108057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 21646294 - 21646347
Alignment:
Q  4 catcacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgtt 57  Q
    ||||||| ||| ||||||||||||||| ||| ||| |||| |||||||||||||    
T  21646294 catcacaaaactggcttgtaaggtgaggattgcccccatttataaacacatgtt 21646347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 30529963 - 30530068
Alignment:
Q  12 aaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacgaccagc 111  Q
    ||||||||||| ||||||||||| |||  | | |||||||||||||||  |||| ||||  ||||||| | | |||||||||||   |||||| |||| |    
T  30529963 aaccggcttgtgaggtgagaattaccccaacttataaacacatgttcaatccattttttgcccgatgtgaaactctttaacacacaccctcacaaccatc 30530062  T
Q  112 actatt 117  Q
    ||||||    
T  30530063 actatt 30530068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 7926570 - 7926510
Alignment:
Q  47 aaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacgac 107  Q
    ||||||||||||| ||||| |||| ||||||||  || ||||||||||| | |||||||||    
T  7926570 aaacacatgttcaggccatcttttgtccgatgtgggactctttaacacaccccctcacgac 7926510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 33381022 - 33381092
Alignment:
Q  45 ataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacgaccagcacta 115  Q
    ||||||||||||||||||||| |||| || |||||| |  ||||||||||||| |||||||||||||||||    
T  33381022 ataaacacatgttcatgccatcttttgtctgatgtaggtctctttaacacatctcctcacgaccagcacta 33381092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 15988265 - 15988193
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgt 79  Q
    |||| ||||||||||| ||||||| ||||||| || | ||||| |||||| || |||||||||| || |||||    
T  15988265 cacaaaaccggcttgtgaggtgaggatttcccccacttataaaaacatgtacaggccatattttgtctgatgt 15988193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 13574953 - 13575040
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacac 94  Q
    |||| ||| ||||||| ||||||| ||||||| || | |||||||||||| ||||||||||||| ||||||||  || ||||||||||    
T  13574953 cacaaaactggcttgtgaggtgaggatttcccccacttataaacacatgtccatgccatattttgtccgatgtgggactctttaacac 13575040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 45828260 - 45828194
Alignment:
Q  45 ataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacgaccagc 111  Q
    ||||||||||||||| ||||| |||| ||||||||  || ||||||||||| | |||||||||||||    
T  45828260 ataaacacatgttcaggccatcttttgtccgatgtgggactctttaacacaccccctcacgaccagc 45828194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 13574716 - 13574826
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacga 106  Q
    |||| ||||||||||| ||||||  ||  ||| || | |||||| |||| ||| |||||||||| ||||||||  || |||||||||||   ||||||||    
T  13574716 cacaaaaccggcttgtgaggtgacgatcgcccgcacttataaacgcatgctcaagccatattttgtccgatgtgggactctttaacacactccctcacga 13574815  T
Q  107 ccagcactatt 117  Q
    | |||||||||    
T  13574816 ctagcactatt 13574826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 25436253 - 25436167
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaaca 93  Q
    |||| ||||||||||| ||||||| |||||||| | | ||||||||||||||| ||||| |||| || ||||| ||| |||||||||    
T  25436253 cacaaaaccggcttgtgaggtgaggatttcccttacttataaacacatgttcaagccatcttttgtctgatgtcagaatctttaaca 25436167  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 27903430 - 27903380
Alignment:
Q  45 ataaacacatgttcatgccatattttctccgatgtaagagtctttaacaca 95  Q
    ||||||||||||||||| |||||||| || ||||| ||| |||||||||||    
T  27903430 ataaacacatgttcatgtcatattttatcggatgtgagactctttaacaca 27903380  T

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Target: scaffold0519 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 2203 - 2094
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacga 106  Q
    |||| ||||||||||||||||||| ||| ||| || | ||||||||||  ||| ||||| |  | ||||||||  || || |||||||| | ||||||||    
T  2203 cacaaaaccggcttgtaaggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactc-ttaacacaccccctcacga 2105  T
Q  107 ccagcactatt 117  Q
    |||||||||||    
T  2104 ccagcactatt 2094  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 6312058 - 6311992
Alignment:
Q  51 acatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacgaccagcactatt 117  Q
    |||||||||  |||| |||| |||||||| ||| ||||||||||||| |||||| || |||||||||    
T  6312058 acatgttcagaccatcttttgtccgatgtgagactctttaacacatcccctcacaacaagcactatt 6311992  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 27993449 - 27993525
Alignment:
Q  18 cttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgtaagagtctttaacaca 95  Q
    ||||| ||||||| ||| |||| ||| |||||||||||| ||||||||||||| ||  |||| ||| |||||||||||    
T  27993449 cttgtgaggtgaggattgccct-atttataaacacatgtccatgccatattttgtctaatgtgagactctttaacaca 27993525  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 10991810 - 10991868
Alignment:
Q  12 aaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatatttt 70  Q
    ||||||||||| ||||||| ||| || ||| | |||||||||||||||||||| |||||    
T  10991810 aaccggcttgtgaggtgaggattgccttcacttataaacacatgttcatgccacatttt 10991868  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 12376507 - 12376579
Alignment:
Q  45 ataaacacatgttcatgccatattttctccgatgtaagagtctttaacacatcacctcacgaccagcactatt 117  Q
    ||||||||||||||||| ||| |||| |  ||||| ||| |||||||||||   ||||||||||| |||||||    
T  12376507 ataaacacatgttcatgtcatcttttgtttgatgtgagactctttaacacacaccctcacgaccaacactatt 12376579  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 52907436 - 52907364
Alignment:
Q  7 cacagaaccggcttgtaaggtgagaatttccctcattcataaacacatgttcatgccatattttctccgatgt 79  Q
    |||| |||| |||||| ||||||| ||| ||| || | |||||||||||||||  ||||||||| ||||||||    
T  52907436 cacaaaaccagcttgtgaggtgaggattgcccccacttataaacacatgttcaaaccatattttatccgatgt 52907364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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