View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14543_low_14 (Length: 212)
Name: NF14543_low_14
Description: NF14543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14543_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 8654095 - 8653913
Alignment:
| Q |
18 |
aaacaaagttttcatggtgtgcaaaataaaaacaattttattattcnnnnnnncaattgtttgttatatcagaacccgtaacttgttatggattgaatgt |
117 |
Q |
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| T |
8654095 |
aaacaaagttttcatggtgtgcaaaataaaaacaattttattatt-aaaaaagcaattgtttgttatatcagaacccgtaacttgttatggattgaatgt |
8653997 |
T |
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| Q |
118 |
tggcaattgcaacaagaacaacaaaaatgttcaatttttccacacttgttcataatccacaaccccacacacttttcttctctc |
201 |
Q |
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| T |
8653996 |
tggcaattgcaacaagaacaacaaaaatgttcaatttttccacacttgttcataatccacaaccccacacacttttcttctctc |
8653913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 9172128 - 9172195
Alignment:
| Q |
134 |
aacaacaaaaatgttcaatttttccacacttgttcataatccacaaccccacacacttttcttctctc |
201 |
Q |
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| T |
9172128 |
aacaacaacaatgttcaatttttccacccttgttcataatcctcaaccccaaacactcatcttctctc |
9172195 |
T |
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