View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14543_low_5 (Length: 440)
Name: NF14543_low_5
Description: NF14543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14543_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 117 - 358
Target Start/End: Complemental strand, 12438771 - 12438528
Alignment:
| Q |
117 |
aaaattattcactatgactacatgtatttcttcaatctatgtaaaacaaaacaagcnnnnnnnctgtgtttttagtccttacagagggattaaaaacatg |
216 |
Q |
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| T |
12438771 |
aaaattattcactatgactacatgtatttcttcaatctatgtaaaacaaaacaaacaaaaaaactgtgtttttagtccttacaaaaggattaaaaacatg |
12438672 |
T |
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| Q |
217 |
tagttttgttagatataggaactaaaatgaatgaacagattatataaacta--aacctgaacggtcgcaattttatggggatcaaaatgtatttaactcg |
314 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12438671 |
tagttttgttagatatagaaactaaaatgaatgaacagattatataaactataaacatgaacggtcgcaattttatggggatcaaaatgtatttaacttt |
12438572 |
T |
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| Q |
315 |
taaataaatgagaaagaaattaagcttgactaaagtaatatata |
358 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12438571 |
taaataaatgagaaagaaattaagcctgactaaagtaatatata |
12438528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 12439340 - 12439234
Alignment:
| Q |
21 |
ttgccctaactttacccaacctcctttataaaggcagcga--ataggctattgtcttccctcgaagatctgaagcttaatgaatcttaaaacaccgttaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12439340 |
ttgccctaactttacccaacctcctttataaaggcagcgagaataggccattgtcttccctcgaagatctgaagcttaatgaatcttaaaacaccgttaa |
12439241 |
T |
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| Q |
119 |
aattatt |
125 |
Q |
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||||||| |
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| T |
12439240 |
aattatt |
12439234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 12438483 - 12438414
Alignment:
| Q |
357 |
taaccaaggctgttggagcttcatctaacaaaaatggagaaaactatacatgttaaatacttgacctttg |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |
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| T |
12438483 |
taaccaaggctgttggagcttcatctaacaaaaatggagaaaactttacatattaaatacttgaactttg |
12438414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 12445746 - 12445651
Alignment:
| Q |
27 |
taactttacccaacctcctttataaaggcagcgaataggctattgtcttccctcgaagatctgaagcttaatgaatcttaaaacaccgttaaaatt |
122 |
Q |
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||||||| ||| |||||||||||||||||||||| |||| | ||||| || ||| ||||||||||||||||||||| | |||||||||| ||||| |
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| T |
12445746 |
taactttgcccggcctcctttataaaggcagcgaacaggccactgtctcccatcggagatctgaagcttaatgaatcctgaaacaccgttcaaatt |
12445651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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