View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14543_low_8 (Length: 304)
Name: NF14543_low_8
Description: NF14543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14543_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 65 - 288
Target Start/End: Complemental strand, 28468372 - 28468143
Alignment:
| Q |
65 |
aaaatagactccaccatgcttcaataaagaaagaaaaaa--ggagatagactccatcatttttagtgaaaaagaaggtaaaatcatggtttcgaaaacaa |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28468372 |
aaaatagactccaccatgcttcaataaagaaagaaaaaaaaggagatagactccatcatttttagtaaaaaagaaggtaaaatcatggtttcgaaaacaa |
28468273 |
T |
|
| Q |
163 |
aagtttattacaccatgctaaaacagaacaagttgcatctaatattcacttctggttgcgtgctcgtgccttcattgctgcaacatcgaagggtaatatg |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28468272 |
aagtttattacaccatgctaaaacagaacaagttgcatctaatattcacttctggttgcgcgctcgtgccttcattgctgcaacatcgaagggtaatatg |
28468173 |
T |
|
| Q |
263 |
gtta----atggttgtgtttatgaatattg |
288 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
28468172 |
gttaatgcatggttgtgtttatgaatattg |
28468143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28477624 - 28477558
Alignment:
| Q |
1 |
ctagtggtgcaaaccagttatggaactatggaagtggacnnnnnnncagaagttatgagaaaggaaa |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
28477624 |
ctagtggtgcaaaccagttatggaactatggaaatggacaaaaaaacagaagttatgagaaaggaaa |
28477558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 24622251 - 24622339
Alignment:
| Q |
177 |
atgctaaaacagaacaagttgcatctaatattcacttctggttgcgtgctcgtgccttcattgctgcaacatcgaagggtaatatggtt |
265 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| || | ||||||||||| || |||| |||| |||| |||||||||| |||| |
|
|
| T |
24622251 |
atgctaaaacagaacaagttgcatctggtattcatttcaggcttcgtgctcgtgcttttattgttgcagcatcaaagggtaatagggtt |
24622339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University