View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14544_high_2 (Length: 387)
Name: NF14544_high_2
Description: NF14544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14544_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 387
Target Start/End: Original strand, 36842079 - 36842459
Alignment:
| Q |
7 |
tccaagaatatatatcatatgatgagcttccaaaattgcatgacaaatatcctcccaacatttactatgttgaaacatttttccaccgtcgagttcgatc |
106 |
Q |
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| T |
36842079 |
tccaataatatatatcatatgatgagcttccaaaattgcatgacaaatatcctcccaacatttactatgttgaaacatttttccaccttcgagttcgatc |
36842178 |
T |
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| Q |
107 |
tcaggtagcataccatccggtacatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgccataattaacac |
206 |
Q |
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| T |
36842179 |
tcaggtagcataccatccggtacatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgccataattaacac |
36842278 |
T |
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| Q |
207 |
ttccattatcttcattaacatcaatagacatatactgaattgaaatatgcagttcaggataaggtttcaagcagtttccatattgaccaataattggaaa |
306 |
Q |
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| T |
36842279 |
ttccattatcttcattaacatcaatagacatatactgaattgaaatatgcagttcaggataaggtttcaagcagtttccatattgaccaataattggaaa |
36842378 |
T |
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| Q |
307 |
ccaatcattaagaatgtttccagagagtatcttttgaacaggtatttccacaactccaatgagttcagcaccaagaatatc |
387 |
Q |
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| T |
36842379 |
ccaatcattaagaatgtttccagagagtatcttttgaacaggtatttccacaactccaatgagttcagcaccaagaatatc |
36842459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 3120864 - 3120931
Alignment:
| Q |
128 |
acatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgcc |
195 |
Q |
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| T |
3120864 |
acatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgcc |
3120931 |
T |
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