View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14544_low_2 (Length: 521)
Name: NF14544_low_2
Description: NF14544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14544_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 6621310 - 6620821
Alignment:
| Q |
18 |
agaacaagtgagagacatcaaagaacaaagctatggaccctcctcaaacacaatccattgatatttcaaacccagctggagatgatttacaagacaaaat |
117 |
Q |
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| T |
6621310 |
agaacaagtgagagacatcaaagaacaaagctatggaccctcctcaaacacaatccattgatatttcaaacccagctggagatgatttacaagacaaaat |
6621211 |
T |
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| Q |
118 |
catcaacgattggtaatcaatctatcttgtttctttttgttcataaattcattcaatttttgcaataattctaagaaataaaaacatttatttggtatcg |
217 |
Q |
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| T |
6621210 |
catcaacgattggtaatcaatctatcttgtttctttttgttcataaattcattcaatttttgcaataattctaagaaataaaaacatttatttggtatcg |
6621111 |
T |
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| Q |
218 |
tggtaggtttgtcaaaattacgatgaactattctgattttgcaagagctatatagattactgtgaatgtgcaaaaactacgtcgtataacttttgcaaaa |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||| |
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| T |
6621110 |
tggtaggtttgtcaaaattacgatgaattattctgattttgcaagagctatatagattaccgtgattgtgcaaaaactacattgtataacttttgcaaaa |
6621011 |
T |
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| Q |
318 |
tcaagacggcttactatgatttcaatacatccactgtgataccaaacatatattaattgtctgactttgnnnnnnnattatgggatgatgcagttgttct |
417 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6621010 |
tcaagacggcttcctatgatttcaatacatccactgtgacaccaaacatatattaattgtctgactttg-ttttttattatgggatgatgcagttgttct |
6620912 |
T |
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| Q |
418 |
tgctgttatgactgtacacaaggtttctttgacttcttgtgttgcagcttctggtgaattctttgaattagatttcaatttcaagtattat |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6620911 |
tgctgttatgactgtacacaaggtttctttgacttcttgtgttgcagcttctggtgaattctttgaattagatttcaatttcaagtattat |
6620821 |
T |
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