View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14544_low_3 (Length: 397)
Name: NF14544_low_3
Description: NF14544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14544_low_3 |
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| [»] scaffold0831 (1 HSPs) |
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Alignment Details
Target: scaffold0831 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5245 - 5451
Alignment:
| Q |
1 |
catgagcagaatgtatcaatgtttcctgaaatatctggtacacggaagagctcgtccgtaaaaggagaactaattaaatatcaatccaatatgtcataga |
100 |
Q |
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| T |
5245 |
catgagcagaatgtatcaatgtttcctgaaatatatggtacagggaagagctcgtccgtaaaaggagaactaa----atatcaatccaacatgtcataga |
5340 |
T |
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| Q |
101 |
aagataataagcattaaaataaaaccagggaaaccaaacaagtactacttcctattgtttaataaaact---tgctttgactacaaaaaccaattaattg |
197 |
Q |
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| T |
5341 |
aagataataagcattaaaataaaaccagggaaaccaaacaagtactacttcctattgtttaataaaactttatgctttgactac-aaaaccaattaattg |
5439 |
T |
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| Q |
198 |
tctacttctcca |
209 |
Q |
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|||||||||||| |
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| T |
5440 |
tctacttctcca |
5451 |
T |
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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 17392183 - 17392134
Alignment:
| Q |
121 |
aaaaccagggaaaccaaacaagtactacttcctattgtttaataaaactt |
170 |
Q |
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| T |
17392183 |
aaaaccagggaaaccaaacaagtactacttcctattgtttaataaaactt |
17392134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 286
Target Start/End: Original strand, 27230073 - 27230187
Alignment:
| Q |
171 |
gctttgactacaaaaaccaattaattgtctacttctccaattgtaccaaagtttttcttgtaaggtaggattagacaattcttactgtctcctttaaaat |
270 |
Q |
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| T |
27230073 |
gctttgactacaaaagc-aattaactgtttattcctccaattggaccaaggtttttcttgtaatgtactatttgacaaatatgaatttctcttttaaaac |
27230171 |
T |
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| Q |
271 |
caatctcctcaatcac |
286 |
Q |
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| T |
27230172 |
cgatctcctcaatcac |
27230187 |
T |
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