View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14544_low_5 (Length: 321)

Name: NF14544_low_5
Description: NF14544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14544_low_5
NF14544_low_5
[»] chr4 (6 HSPs)
chr4 (131-304)||(36605547-36605720)
chr4 (137-304)||(27106236-27106403)
chr4 (137-304)||(12630519-12630685)
chr4 (1-95)||(36605756-36605853)
chr4 (3-95)||(27106099-27106194)
chr4 (36-95)||(12630418-12630477)
[»] chr6 (4 HSPs)
chr6 (137-304)||(2483421-2483588)
chr6 (144-304)||(5364514-5364674)
chr6 (3-95)||(2483630-2483725)
chr6 (3-80)||(5364368-5364450)
[»] chr1 (2 HSPs)
chr1 (137-304)||(44678835-44679002)
chr1 (3-95)||(44678698-44678793)
[»] chr8 (3 HSPs)
chr8 (137-304)||(14199370-14199537)
chr8 (3-95)||(14199576-14199671)
chr8 (132-220)||(18609143-18609231)
[»] chr2 (1 HSPs)
chr2 (131-270)||(13512794-13512933)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 131 - 304
Target Start/End: Complemental strand, 36605720 - 36605547
Alignment:
Q  131 agaggacatgtgacaatgttatgtcctaaacctttgcataatccacaagtattcatgttatgtgataactcttttccacctttaagtcgtcgccgtttgg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605720 agaggacatgtgacaatgttatgtcctaaacctttgcataatccacaagtattcatgttatgtgataactcttttccacctttaagtcgtcgccgtttgg 36605621  T
Q  231 gacggcctttaggtttggattttggaggacaatgaacaacgtgttgtgggtgaggttcattgtaacaatctagt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605620 gacggcctttaggtttggattttggaggacaatgaacaacgtgttgtgggtgaggttcattgtaacaatctagt 36605547  T

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Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 137 - 304
Target Start/End: Original strand, 27106236 - 27106403
Alignment:
Q  137 catgtgacaatgttatgtcctaaacctttgcataatccacaagtattcatgttatgtgataactcttttccacctttaagtcgtcgccgtttgggacggc 236  Q
    |||||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||| |    
T  27106236 catgtggcaatgttatgtcctaaacctctgcataatccacaagtgttcatattatgtgatagctcttttccacctttaagtcgtcgtcgtttgggacgac 27106335  T
Q  237 ctttaggtttggattttggaggacaatgaacaacgtgttgtgggtgaggttcattgtaacaatctagt 304  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  27106336 ctttaggtttggattttggaggacaatgaacaacatgttgtggttgaggttcattgttacaatctagt 27106403  T

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Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 137 - 304
Target Start/End: Original strand, 12630519 - 12630685
Alignment:
Q  137 catgtgacaatgttatgtcctaaacctttgcataatccacaagtattcatgttatgtgataactcttttccacctttaagtcgtcgccgtttgggacggc 236  Q
    |||||| |||||||||||||||||||| ||||||||| ||| || ||||| |||||||||| |||||||||||||||||||||||| ||||||||||| |    
T  12630519 catgtggcaatgttatgtcctaaacctctgcataatcaaca-gtgttcatattatgtgatagctcttttccacctttaagtcgtcgtcgtttgggacgac 12630617  T
Q  237 ctttaggtttggattttggaggacaatgaacaacgtgttgtgggtgaggttcattgtaacaatctagt 304  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||    
T  12630618 ctttaggtttggattttggaggacaaagaacaacatgttgtggttgaggttcattgttacaatctagt 12630685  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 36605853 - 36605756
Alignment:
Q  1 atattagaagtctaaagaattttataaataaaatgaat---aaatgtgtacctaaacttttggaaggagaattggatttaaatatgcatcttcacaaa 95  Q
    ||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605853 atattagaagtctaaagaattttataaataaaatgaattataaatgtctacctaaacttttggaaggagaattggatttaaatatgcatcttcacaaa 36605756  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 27106099 - 27106194
Alignment:
Q  3 attagaagtctaaagaattttataaataaaatgaata---aatgtgtacctaaacttttggaaggagaattggatttaaatatgcatcttcacaaa 95  Q
    ||||||| | || ||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||    
T  27106099 attagaaatatagagaatttaataaataaaatgaataataaatgtgtacctaaacttttggaaggagaattggatttaaatttgaatcgtcacaaa 27106194  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 12630418 - 12630477
Alignment:
Q  36 aataaatgtgtacctaaacttttggaaggagaattggatttaaatatgcatcttcacaaa 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||    
T  12630418 aataaatgtgtacctaaacttttggaaggagaattggatttaaatttggatcgtcacaaa 12630477  T

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Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 137 - 304
Target Start/End: Complemental strand, 2483588 - 2483421
Alignment:
Q  137 catgtgacaatgttatgtcctaaacctttgcataatccacaagtattcatgttatgtgataactcttttccacctttaagtcgtcgccgtttgggacggc 236  Q
    |||||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||| |    
T  2483588 catgtggcaatgttatgtcctaaacctctgcataatccacaagtgttcatattatgtgatagctcttttccacctttaagtcgtcgtcgtttgggacgac 2483489  T
Q  237 ctttaggtttggattttggaggacaatgaacaacgtgttgtgggtgaggttcattgtaacaatctagt 304  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  2483488 ctttaggtttggattttggaggacaatgaacaacatgttgtggttgaggttcattgttacaatctagt 2483421  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 5364514 - 5364674
Alignment:
Q  144 caatgttatgtcctaaacctttgcataatccacaagtattcatgttatgtgataactcttttccacctttaagtcgtcgccgtttgggacggcctttagg 243  Q
    |||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||    
T  5364514 caatgttatgtcctaaacctctgcataatccacaagtgttcatattatgtgatagctcttttccacctttaagtcgtcgtcgtttgggacgacctttagg 5364613  T
Q  244 tttggattttggaggacaatgaacaacgtgttgtgggtgaggttcattgtaacaatctagt 304  Q
    ||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  5364614 ttttgattttggaggacaatgaacaacatgttgtggttgaggttcattgttacaatctagt 5364674  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 2483725 - 2483630
Alignment:
Q  3 attagaagtctaaagaattttataaataaaatgaataa---atgtgtacctaaacttttggaaggagaattggatttaaatatgcatcttcacaaa 95  Q
    ||||||| | || ||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| || ||| |||||||    
T  2483725 attagaaatatagagaatttaataaataaaatgaataataaatgtgtacctaaacttttggaaggagaattggatttaaatttgaatcgtcacaaa 2483630  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 5364368 - 5364450
Alignment:
Q  3 attagaagtctaaagaattttataaataaaatgaataa-----atgtgtacctaaacttttggaaggagaattggatttaaat 80  Q
    ||||||| | || ||||||| ||||| |||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  5364368 attagaaatatagagaatttaataaacaaaatgaataataaatatgtgtacctaaacttttggaaggagaattggatttaaat 5364450  T

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Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 137 - 304
Target Start/End: Original strand, 44678835 - 44679002
Alignment:
Q  137 catgtgacaatgttatgtcctaaacctttgcataatccacaagtattcatgttatgtgataactcttttccacctttaagtcgtcgccgtttgggacggc 236  Q
    |||||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||| |    
T  44678835 catgtggcaatgttatgtcctaaacctctgcataatccacaagtgttcatattatgtgatagctcttttccacctttaagtcgtcgtcgtttgggacgac 44678934  T
Q  237 ctttaggtttggattttggaggacaatgaacaacgtgttgtgggtgaggttcattgtaacaatctagt 304  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  44678935 ctttaggtttggattttggaggacaatgaacaacatgttgtggttgaggttcattgttacaatctagt 44679002  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 44678698 - 44678793
Alignment:
Q  3 attagaagtctaaagaattttataaataaaatgaata---aatgtgtacctaaacttttggaaggagaattggatttaaatatgcatcttcacaaa 95  Q
    ||||||| | || ||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||    
T  44678698 attagaaatatagagaatttaataaataaaatgaataataaatgtgtacctaaacttttggaaggagaattggatttaaatttggatcgtcacaaa 44678793  T

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Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 137 - 304
Target Start/End: Complemental strand, 14199537 - 14199370
Alignment:
Q  137 catgtgacaatgttatgtcctaaacctttgcataatccacaagtattcatgttatgtgataactcttttccacctttaagtcgtcgccgtttgggacggc 236  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||| ||||||||||| |    
T  14199537 catgtgacaatgttatgtcataaacctctgcataatccacaagtgttcatattatgtgatagctcttttccccctttaagtcgtcgtcgtttgggacgac 14199438  T
Q  237 ctttaggtttggattttggaggacaatgaacaacgtgttgtgggtgaggttcattgtaacaatctagt 304  Q
    ||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||    
T  14199437 ctttaggtttggattttggaggacaataaacaacatgttgtggttgaggttcattgttacaatctagt 14199370  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 14199671 - 14199576
Alignment:
Q  3 attagaagtctaaagaattttataaataaaatgaataa---atgtgtacctaaacttttggaaggagaattggatttaaatatgcatcttcacaaa 95  Q
    ||||||| | || ||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| || ||| |||||||    
T  14199671 attagaaatatagagaatttaataaataaaatgaataataaatgtgtacctaaacttttggaaggagaattggatttaaatttggatcgtcacaaa 14199576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 18609143 - 18609231
Alignment:
Q  132 gaggacatgtgacaatgttatgtcctaaacctttgcataatccacaagtattcatgttatgtgataactcttttccacctttaagtcgt 220  Q
    ||||||||||||||| ||||| | ||  |||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||    
T  18609143 gaggacatgtgacaaggttatcttcttcacctttacataatccataagtattcatgttatgtaatagctcttttccacctttaagtcgt 18609231  T

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Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 13512933 - 13512794
Alignment:
Q  131 agaggacatgtgacaatgttatgtcctaaacctttgcataatccacaagtattcatgttatgtgataactcttttccacctttaagtcgtcgccgtttgg 230  Q
    ||||||||||| || || ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||   | |   ||||||    
T  13512933 agaggacatgtaactatattatgtcttaaacctttgcatgatccacaagtattaatgttatgtgataactctttttcgcctttaaaatgcctttgtttgg 13512834  T
Q  231 gacggcctttaggtttggattttggaggacaatgaacaac 270  Q
    |||| ||||| | |||||||| ||||||||||||||||||    
T  13512833 gacgaccttttgttttggattgtggaggacaatgaacaac 13512794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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