View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14544_low_6 (Length: 315)
Name: NF14544_low_6
Description: NF14544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14544_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 9e-67; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 39899127 - 39898975
Alignment:
| Q |
1 |
ccaagaactacaccatgcaagtgatgggttctcggttcagcacttgataggaactggaggtacaggttttgtgcacaaaggaatacttaattcagaagaa |
100 |
Q |
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| T |
39899127 |
ccaagaactacaccatgcaactgatgggttctcggttcagaacttgagaggaactggaggtacaggttttgtgtacaaaggaatacttaattcagaagaa |
39899028 |
T |
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| Q |
101 |
agcgttgttgctgtaaaggatctaaaccttcagaagaaaggagctcataaaag |
153 |
Q |
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| T |
39899027 |
agagttgttgctgtaaaggttctaaaccttcagaagaaaggagctcataaaag |
39898975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 39876315 - 39876163
Alignment:
| Q |
1 |
ccaagaactacaccatgcaagtgatgggttctcggttcagcacttgataggaactggaggtacaggttttgtgcacaaaggaatacttaattcagaagaa |
100 |
Q |
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| T |
39876315 |
ccaagaactacaccatgcaactgacgggttctcggttcagaacttgataggaactggaggtacaggttttgtgtacaaaggaagacttaattcagaagaa |
39876216 |
T |
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| Q |
101 |
agcgttgttgctgtaaaggatctaaaccttcagaagaaaggagctcataaaag |
153 |
Q |
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| T |
39876215 |
agagttgttgctgtaaaggttctaaaccttcagaagaaaggagctcataaaag |
39876163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 39891392 - 39891240
Alignment:
| Q |
1 |
ccaagaactacaccatgcaagtgatgggttctcggttcagcacttgataggaactggaggtacaggttttgtgcacaaaggaatacttaattcagaagaa |
100 |
Q |
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| T |
39891392 |
ccaagagctacaccatgccacagatgggttctcggatcagaacttgataggaaccggaggtataggttttgtgtacaaaggaagacttaattcagaagaa |
39891293 |
T |
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| Q |
101 |
agcgttgttgctgtaaaggatctaaaccttcagaagaaaggagctcataaaag |
153 |
Q |
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| T |
39891292 |
agagttgttgctgtaaaggttctaaaccttcagaagaaaggagctcataaaag |
39891240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 39884415 - 39884286
Alignment:
| Q |
24 |
atgggttctcggttcagcacttgataggaactggaggtacaggttttgtgcacaaaggaatacttaattcagaagaaagcgttgttgctgtaaaggatct |
123 |
Q |
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| T |
39884415 |
atgggttttcggttcagaacttgataggaaccggaggtataggttttgtgtacaaaggaagacttaattcagaagaaagagttgttgctgtaaaggttct |
39884316 |
T |
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| Q |
124 |
aaaccttcagaagaaaggagctcataaaag |
153 |
Q |
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| T |
39884315 |
aaaccttcagaagaaaggagctcataaaag |
39884286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 174 - 315
Target Start/End: Complemental strand, 39898218 - 39898072
Alignment:
| Q |
174 |
aatgttatttcagttacagctcatagatacatgctgacta---------tgccatttaccatgacaggaattagcactatacgattgaaaaagttaagct |
264 |
Q |
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| T |
39898218 |
aatgttattttagttacagctcatagatacatgctgactacatatttcatgccatttaccatgacaggaattagcactatacgattgaaaaagttaagct |
39898119 |
T |
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| Q |
265 |
cattcagtgagtaatatatataagcataagattatactaataaaatgaaat |
315 |
Q |
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| T |
39898118 |
cattcagtgagtaa----tataagcataagattatactaataaaatgaaat |
39898072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 39883134 - 39883096
Alignment:
| Q |
242 |
tatacgattgaaaaagttaagctcattcagtgagtaata |
280 |
Q |
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| T |
39883134 |
tatacaattgaaaaagttaagctcattcagtgagtaata |
39883096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 39875014 - 39874954
Alignment:
| Q |
251 |
gaaaaagttaagctcattcagtgagtaatatatataagcataagattatactaataaaatgaaat |
315 |
Q |
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| T |
39875014 |
gaaaaagttaagttcattcagtgagtaa----tataaacataataatatactaataaaatgaaat |
39874954 |
T |
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