View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14544_low_7 (Length: 310)

Name: NF14544_low_7
Description: NF14544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14544_low_7
NF14544_low_7
[»] chr6 (11 HSPs)
chr6 (34-244)||(31564907-31565117)
chr6 (11-231)||(33414568-33414788)
chr6 (11-231)||(33258194-33258416)
chr6 (11-206)||(33269541-33269740)
chr6 (11-231)||(33395052-33395274)
chr6 (61-233)||(33278972-33279139)
chr6 (127-231)||(33293090-33293194)
chr6 (22-138)||(33384040-33384156)
chr6 (64-188)||(33280358-33280482)
chr6 (24-68)||(33293034-33293078)
chr6 (185-231)||(28873045-28873091)
[»] chr2 (1 HSPs)
chr2 (11-231)||(17447760-17447981)
[»] scaffold0428 (3 HSPs)
scaffold0428 (11-231)||(2315-2537)
scaffold0428 (61-233)||(15114-15281)
scaffold0428 (64-188)||(13771-13895)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 31565117 - 31564907
Alignment:
Q  34 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 133  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  134 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 233  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 31564918  T
Q  234 caagtgttggt 244  Q
     ||||||||||    
T  31564917 taagtgttggt 31564907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 33414568 - 33414788
Alignment:
Q  11 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||    
T  33414568 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaat 33414667  T
Q  111 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctg 210  Q
    |||||||| |||  ||| |||||||||||||||| ||||||||||||||||  || |||||||||||||||| ||||||||||||||||||||||| |||    
T  33414668 tagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccctttttcctg 33414767  T
Q  211 aggtatgcttgcgccttttca 231  Q
    || ||||||||||||||||||    
T  33414768 agatatgcttgcgccttttca 33414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 33258194 - 33258416
Alignment:
Q  11 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 109  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  110 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttc 208  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||      
T  33258294 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 33258393  T
Q  209 tgaggtatgcttgcgccttttca 231  Q
    |||| |||||||||| |||||||    
T  33258394 tgagatatgcttgcggcttttca 33258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 33269541 - 33269740
Alignment:
Q  11 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| || | |||||| |||||||| |||||||||||    
T  33269541 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaat 33269640  T
Q  111 tagaacactaatgtgtgaatcgtgaatg----tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttt 206  Q
    ||||||||  |||  || || |||||||    |||||| |||||||| |||||||  || ||||| | || ||||| |||||||||||||||||||||||    
T  33269641 tagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagacccttttt 33269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 33395052 - 33395274
Alignment:
Q  11 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttcta--ccgataaagtccgtttcacatttcacttca 108  Q
    |||||||||||||||||||   |||||||| |||||||  ||| |||||||||||| | ||||||||   || | |||||| |||||||| |||||||||    
T  33395052 gaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttca 33395151  T
Q  109 attagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttc 208  Q
    || ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  || | || ||||||||||||||||| ||||||||||||||| |||    
T  33395152 atcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccctttgttc 33395251  T
Q  209 tgaggtatgcttgcgccttttca 231  Q
    | ||||||| ||| |||||||||    
T  33395252 taaggtatgattgggccttttca 33395274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 61 - 233
Target Start/End: Original strand, 33278972 - 33279139
Alignment:
Q  61 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 160  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 33279071  T
Q  161 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 233  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  33279072 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 33279139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 33293090 - 33293194
Alignment:
Q  127 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcct 226  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| |||||| |||||||||||||||||||||||||||||| | |||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcacct 33293189  T
Q  227 tttca 231  Q
    |||||    
T  33293190 tttca 33293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 33384040 - 33384156
Alignment:
Q  22 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 121  Q
    |||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |    
T  33384040 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccga 33384139  T
Q  122 tgtgtgaatcgtgaatg 138  Q
    ||||||||| |||||||    
T  33384140 tgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 33280358 - 33280482
Alignment:
Q  64 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 163  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  164 ctcgtcttccggatttcttgtcagc 188  Q
     |  |||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 33293034 - 33293078
Alignment:
Q  24 agcagcaacttgcattgcaagatcatgaacaaactccttgaattt 68  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33293034 agcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 28873091 - 28873045
Alignment:
Q  185 cagcggatgagagacccttttttctgaggtatgcttgcgccttttca 231  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 17447981 - 17447760
Alignment:
Q  11 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 110  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| ||||||    
T  17447981 gaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaat 17447882  T
Q  111 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagaga-cccttttttct 209  Q
    |||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||||| |||||||||||    
T  17447881 tagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttct 17447782  T
Q  210 gaggtatgcttgcgccttttca 231  Q
    ||||||||||||||||||||||    
T  17447781 gaggtatgcttgcgccttttca 17447760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 2315 - 2537
Alignment:
Q  11 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 109  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  110 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttc 208  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||      
T  2415 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 2514  T
Q  209 tgaggtatgcttgcgccttttca 231  Q
    |||| |||||||||| |||||||    
T  2515 tgagatatgcttgcggcttttca 2537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 15281 - 15114
Alignment:
Q  61 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 160  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 15182  T
Q  161 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 233  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  15181 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 15114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 13895 - 13771
Alignment:
Q  64 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 163  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  164 ctcgtcttccggatttcttgtcagc 188  Q
     |  |||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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