View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14544_low_8 (Length: 270)
Name: NF14544_low_8
Description: NF14544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14544_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 28048402 - 28048664
Alignment:
| Q |
1 |
tatcccattatgcgaacgatatacacaattgtgagactgtgtttaagaaaagattactaaaatagcttatgacatgtctaaagctcttttcaatttatct |
100 |
Q |
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| T |
28048402 |
tatcccattatgcgaacgatatacacaattgtgagactgtgtttaagaaaagattacaaaaatagcttatgacatgtctaaagctcttttcaatttatct |
28048501 |
T |
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| Q |
101 |
ctaaaagttagtcaccaccataaaccatccgaacattctcatgtcttcaacattgtacttttatatatttttatgactttctttcatctataatctataa |
200 |
Q |
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| T |
28048502 |
ctaaaagttagtcaccaccataaaccatccgaacattctcatgtcttcaacattgtacttttatatatttttatgactttctttcatctataatctataa |
28048601 |
T |
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| Q |
201 |
gttgcatgcaaaattataataaatcagggatttcgatattctccttcaatattcttcgacatc |
263 |
Q |
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| T |
28048602 |
gttgcatgcaaaattataataaatcagggatttcgatattctccttcaatatttttctacatc |
28048664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 28037306 - 28037371
Alignment:
| Q |
53 |
attactaaaatagcttatgacatgtc----taaagctcttttcaatttatctctaaaagttagtca |
114 |
Q |
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| T |
28037306 |
attacaaaaataggttatgacatgtctgtctaaagctgtttttaatttatctctaaaagttagtca |
28037371 |
T |
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