View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14545_high_13 (Length: 327)

Name: NF14545_high_13
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14545_high_13
NF14545_high_13
[»] chr5 (6 HSPs)
chr5 (142-195)||(42116801-42116854)
chr5 (15-50)||(42116937-42116972)
chr5 (165-194)||(34233805-34233834)
chr5 (1-34)||(42116959-42116992)
chr5 (21-50)||(42122700-42122729)
chr5 (21-50)||(42128095-42128124)
[»] chr3 (3 HSPs)
chr3 (142-191)||(8522147-8522196)
chr3 (230-272)||(8521926-8521968)
chr3 (5-47)||(8522320-8522362)
[»] chr6 (1 HSPs)
chr6 (1-50)||(25523864-25523913)
[»] chr4 (1 HSPs)
chr4 (21-50)||(11117357-11117386)


Alignment Details
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 42116854 - 42116801
Alignment:
Q  142 tgtttataagtgcatgccacaagatgtgttatataataaaattccaagtttata 195  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  42116854 tgtttacatgtgcatgccacaagatgtgttatataataaaattccaagtttata 42116801  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 42116972 - 42116937
Alignment:
Q  15 gaatcagaatcagaatcagatggtgcaaatgtcata 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  42116972 gaatcagaatcagaatcagatggtgcaaatgtcata 42116937  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 34233805 - 34233834
Alignment:
Q  165 atgtgttatataataaaattccaagtttat 194  Q
    ||||||||||||||||||||||||||||||    
T  34233805 atgtgttatataataaaattccaagtttat 34233834  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 42116992 - 42116959
Alignment:
Q  1 catggttcaaccatgaatcagaatcagaatcaga 34  Q
    |||||| |||||||||||||||||||||||||||    
T  42116992 catggtacaaccatgaatcagaatcagaatcaga 42116959  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 42122729 - 42122700
Alignment:
Q  21 gaatcagaatcagatggtgcaaatgtcata 50  Q
    ||||||||||||||||||||||||||||||    
T  42122729 gaatcagaatcagatggtgcaaatgtcata 42122700  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 42128124 - 42128095
Alignment:
Q  21 gaatcagaatcagatggtgcaaatgtcata 50  Q
    ||||||||||||||||||||||||||||||    
T  42128124 gaatcagaatcagatggtgcaaatgtcata 42128095  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 8522196 - 8522147
Alignment:
Q  142 tgtttataagtgcatgccacaagatgtgttatataataaaattccaagtt 191  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8522196 tgtttataagtgcatgccacaagttgtgttatataataaaattccaagtt 8522147  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 8521968 - 8521926
Alignment:
Q  230 aatagacatggtaagcgtgatatttacatgattagttagctaa 272  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  8521968 aatagacatgataagtgtgatatttacatgattagttagctaa 8521926  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 8522362 - 8522320
Alignment:
Q  5 gttcaaccatgaatcagaatcagaatcagatggtgcaaatgtc 47  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  8522362 gttcaatcacgaatcagaatcagaatcagatggtgcaaatgtc 8522320  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25523864 - 25523913
Alignment:
Q  1 catggttcaaccatgaatcagaatcagaatcagatggtgcaaatgtcata 50  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||||    
T  25523864 catggtacagccatgaatcagaatcagaatcagatgatgcaaatgtcata 25523913  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 11117386 - 11117357
Alignment:
Q  21 gaatcagaatcagatggtgcaaatgtcata 50  Q
    ||||||||||||||||||||||||||||||    
T  11117386 gaatcagaatcagatggtgcaaatgtcata 11117357  T

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