View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14545_high_24 (Length: 213)
Name: NF14545_high_24
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_high_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 35474675 - 35474853
Alignment:
| Q |
35 |
attttaaccgttgtgcattatgatatgtaggtggagatgtttcaagtggaggaaagaggttattatgcaaaaatattgtgcaataaaggagaaggagtag |
134 |
Q |
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| T |
35474675 |
attttaaccgttgtgcattatgatatgtaggtggagatgtttcaagtggaggaaagaggttattatgcaaaaatattgtgcaataaaggagaaggagtag |
35474774 |
T |
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| Q |
135 |
ctgcttcattgtacaaggctcttgagtctcttgcaaatttcaatgtccaaaactcaaacttagctacagtttgtgacac |
213 |
Q |
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| T |
35474775 |
ctgcttcattgtacaaggctcttgagtctcttgcaaatttcaatgtccaaaactcaaacttagctacagtttgtgacac |
35474853 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 20951173 - 20951085
Alignment:
| Q |
71 |
atgtttcaagtggaggaaagaggttattatgcaaaaatattgtgcaataaaggagaaggagtagctgcttcattgtacaaggctcttga |
159 |
Q |
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| T |
20951173 |
atgtttcaagtagatgaaagagggttttatgttaaaatagtatgcaataagggagaaagggtggctgcttcattatacaagtctcttga |
20951085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 3537770 - 3537869
Alignment:
| Q |
63 |
aggtggagatgtttcaagtggaggaaagaggttattatgcaaa-aatattgtgcaataaaggagaaggagtagctgcttcattgtacaaggctcttgagt |
161 |
Q |
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| T |
3537770 |
aggtggacatgtttgaagtggaggaaagaaggcattatgaaaatagtagtgtgcaat-taggataaggagtatctgctt-tttgtacaaggctcttgagt |
3537867 |
T |
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