View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14545_high_25 (Length: 212)

Name: NF14545_high_25
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14545_high_25
NF14545_high_25
[»] chr2 (16 HSPs)
chr2 (4-198)||(8572901-8573095)
chr2 (4-183)||(9357720-9357899)
chr2 (4-140)||(10348322-10348458)
chr2 (4-141)||(9316568-9316705)
chr2 (4-140)||(10353661-10353797)
chr2 (4-141)||(9283643-9283780)
chr2 (27-139)||(7115107-7115219)
chr2 (4-139)||(9329139-9329274)
chr2 (4-140)||(9292468-9292604)
chr2 (4-141)||(9275061-9275198)
chr2 (4-136)||(10372401-10372533)
chr2 (4-141)||(9321516-9321653)
chr2 (16-67)||(11987017-11987068)
chr2 (7-53)||(12012096-12012142)
chr2 (103-140)||(9060589-9060626)
chr2 (7-51)||(14550914-14550958)
[»] scaffold0667 (1 HSPs)
scaffold0667 (5-183)||(5018-5196)
[»] chr3 (1 HSPs)
chr3 (7-141)||(37463041-37463175)
[»] chr4 (1 HSPs)
chr4 (4-140)||(26575413-26575549)
[»] chr8 (1 HSPs)
chr8 (7-183)||(41966134-41966310)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 8573095 - 8572901
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  8573095 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgagtcaaagcgattaaaccatta 8572996  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataagagcaattttggtgctgttaccggagaaaggatggttgagtggaacctcggcagtggttag 198  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  8572995 gaaatggcgaggaggccgttacatgaaccgataagagtaattttggtgctgttaccggagaaaggatggttgagtggaaactcggcggtggttag 8572901  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 9357720 - 9357899
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    ||||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||| | ||||| ||| | |||||||||   ||||||    
T  9357720 aagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattg 9357819  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataagagcaattttggtgctgttaccggagaaaggatggttgagtggaac 183  Q
    || |||||||||||||||||||||||||||||||||| ||| |||||||||||||  | |||||| ||||||||||||||    
T  9357820 gagatggcgaggaggccgttacatgaaccgataagagaaatgttggtgctgttacgcgtgaaagggtggttgagtggaac 9357899  T

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Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 10348322 - 10348458
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||  ||  ||||| ||||| ||| ||||||  ||  ||    
T  10348322 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattacccctgtg 10348421  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataagag 140  Q
    || ||||||||||||||||||||||||||||||||||    
T  10348422 gagatggcgaggaggccgttacatgaaccgataagag 10348458  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 9316568 - 9316705
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    |||||| || |||||||||||  |||||||||||||||||||||||||||||| ||||| ||||||| | | ||| ||| | |||||||||  |||||||    
T  9316568 aagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatgaaagcgatttgaccattg 9316667  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataagagc 141  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  9316668 gaaatggcgagaaggccgttacatgaaccgagaagagc 9316705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 10353661 - 10353797
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    |||||||||||||||||||||  |||| ||||||||||| |||||||| |||| ||||| ||||| | | ||||| ||||| ||||| ||||  || | |    
T  10353661 aagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaaagctattacgccgtgg 10353760  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataagag 140  Q
    || ||||||||||||||||||||||||||||||||||    
T  10353761 gacatggcgaggaggccgttacatgaaccgataagag 10353797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 9283780 - 9283643
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    |||||||||||||||||||||   ||||||||||||||||| ||||||||||| |||||   | ||||| || || ||||| ||||| |||   ||||||    
T  9283780 aagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttgcgtcgtttggatgcgtaaaagcaattgggccattg 9283681  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataagagc 141  Q
     | |||||||||||||||||||||||||| ||||||||    
T  9283680 tagatggcgaggaggccgttacatgaaccaataagagc 9283643  T

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Target: chr2; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 7115219 - 7115107
Alignment:
Q  27 gatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattggaaatggcgaggaggccgttaca 126  Q
    |||||||||||||||||| ||||||||||| |||||   | |||| |||||| | ||| |||||||||   |||||||| ||||||||||||||||||||    
T  7115219 gatgtttacgggtgttagtgttccagattgtgatttcagttgcgtgattaggatacgtaaaagcgatttggccattggagatggcgaggaggccgttaca 7115120  T
Q  127 tgaaccgataaga 139  Q
    |||||||||||||    
T  7115119 tgaaccgataaga 7115107  T

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Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 9329139 - 9329274
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    |||||| || |||||||||||  |||||||||||||||||||||||||||||| ||||| ||||| | | ||||| | | | |||||||||   |||| |    
T  9329139 aagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcgatttggccatag 9329238  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataaga 139  Q
    || || || | ||||||||| |||||||||||||||    
T  9329239 gagatagcaatgaggccgttgcatgaaccgataaga 9329274  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 9292468 - 9292604
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    |||||||||||||||||||||  |||||||| | |||||||||||| ||| || ||||| ||| | | | | ||| ||||| ||   ||||   | ||||    
T  9292468 aagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattg 9292567  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataagag 140  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9292568 gaaatggcgaggaggccgttacatgaaccaataagag 9292604  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 9275061 - 9275198
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    |||||||||||||||||||||  ||||||||| ||||||||||||||||||||  ||||  || || || | ||| ||| | || ||| ||   ||||||    
T  9275061 aagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcctgaaggcggtttggccattg 9275160  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataagagc 141  Q
    || || || | |||||||||||||||||| ||||||||    
T  9275161 gagatagcaatgaggccgttacatgaacctataagagc 9275198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 10372401 - 10372533
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||| || |||||  |||| ||||  ||| |   | ||||||| |   || |||    
T  10372401 aagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattggggtcacaagggttaatgaaagcgaatttgccgttg 10372500  T
Q  104 gaaatggcgaggaggccgttacatgaaccgata 136  Q
     | ||||||||||||||||||||||||||||||    
T  10372501 cagatggcgaggaggccgttacatgaaccgata 10372533  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 9321516 - 9321653
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    |||||| || |||||||| ||  |||| ||||| ||| ||||||||||||||| ||||| ||||| ||  ||||| ||  | ||||| | |   || | |    
T  9321516 aagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggccgtgg 9321615  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataagagc 141  Q
    || |||||||||||||||||||| ||||||||||||||    
T  9321616 gagatggcgaggaggccgttacaggaaccgataagagc 9321653  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 11987068 - 11987017
Alignment:
Q  16 agggataatgtgatgtttacgggtgttagggttccagattgcgatttggttg 67  Q
    |||||||||  |||||||||||||||||||||||||||  ||||||| ||||    
T  11987068 agggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttg 11987017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 12012142 - 12012096
Alignment:
Q  7 agggagaaaagggataatgtgatgtttacgggtgttagggttccaga 53  Q
    |||||||  ||||||||| |||||||||||| |||||||||||||||    
T  12012142 agggagattagggataatctgatgtttacggatgttagggttccaga 12012096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 9060626 - 9060589
Alignment:
Q  103 ggaaatggcgaggaggccgttacatgaaccgataagag 140  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  9060626 ggaaagggcgaggaggccgttacatgaaccaataagag 9060589  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 14550914 - 14550958
Alignment:
Q  7 agggagaaaagggataatgtgatgtttacgggtgttagggttcca 51  Q
    |||||||  |||||||||| ||||||||||| |||||||||||||    
T  14550914 agggagatcagggataatgcgatgtttacggatgttagggttcca 14550958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 5018 - 5196
Alignment:
Q  5 agagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattgg 104  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| | ||||| ||  | | |||||||   || ||||    
T  5018 agagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagcgatttcgccgttgg 5117  T
Q  105 aaatggcgaggaggccgttacatgaaccgataagagcaattttggtgctgttaccggagaaaggatggttgagtggaac 183  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||  | |||||| ||||||||||||||    
T  5118 aaacggcgaggaggccgttacatgaaccgataagagcaatgttggtgctgttacgcgtgaaagggtggttgagtggaac 5196  T

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Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 37463041 - 37463175
Alignment:
Q  7 agggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattggaa 106  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||| ||||| ||||||| | ||||| ||||| |||||||||   ||||||||     
T  37463041 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 37463140  T
Q  107 atggcgaggaggccgttacatgaaccgataagagc 141  Q
    || ||||||||||||||||||||||||||||||||    
T  37463141 atagcgaggaggccgttacatgaaccgataagagc 37463175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 26575413 - 26575549
Alignment:
Q  4 aagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattg 103  Q
    |||||||||||||||||||||  ||| ||||| ||||| |||||||||||||||||||| ||||| | | || || ||||| ||||| ||||  || | |    
T  26575413 aagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaaagccattacgccgtgg 26575512  T
Q  104 gaaatggcgaggaggccgttacatgaaccgataagag 140  Q
    || ||||||||||||||||||||||||||||||||||    
T  26575513 gacatggcgaggaggccgttacatgaaccgataagag 26575549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 41966310 - 41966134
Alignment:
Q  7 agggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgcgtcaaagcgattaaaccattggaa 106  Q
    ||||||||||||||||||  ||||||||| | ||||||||||||||| || |||||  ||   ||| | ||| |  |  ||| |||||   ||||||||     
T  41966310 agggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggag 41966211  T
Q  107 atggcgaggaggccgttacatgaaccgataagagcaattttggtgctgttaccggagaaaggatggttgagtggaac 183  Q
    |||  ||||||||||||||||||||| | |||||  || |||||||||| ||   ||||||||||||||||||||||    
T  41966210 atgcagaggaggccgttacatgaacccagaagagtgatgttggtgctgtgacgcaagaaaggatggttgagtggaac 41966134  T

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