View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14545_low_10 (Length: 377)
Name: NF14545_low_10
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 364
Target Start/End: Original strand, 52767488 - 52767848
Alignment:
| Q |
7 |
gattagtttctgtgtgtcgtttgtaattgtctccatgatctcgacgacgaaacggtaacgcagagagatgttgttgtcgttcacggcgtttagcagcggg |
106 |
Q |
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| T |
52767488 |
gattaatttctgtgtgtcgtttgtaattgtctacatgatctctacgacgaaacggtaacgcagagagatgttgttgtcgttcacggcgtttagcagcggg |
52767587 |
T |
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| Q |
107 |
aacccaagtactcttaacatgtgtttgacattgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgcttggttacca |
206 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52767588 |
aacccaagtactcttaacatgtgtttgacactgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgcttggttacca |
52767687 |
T |
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| Q |
207 |
cagtcctgacaattcattcctccactacgcctcataataccaaatcttctttcacactcatcaaacgaagaattt---nnnnnnnnnnnnnnnnnntgac |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52767688 |
cagtcctgacaattcattcctccactacgcctcataataccaaatcttctttcacactcatcaaacgaagaatttctactactactactactactatgac |
52767787 |
T |
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| Q |
304 |
ccgctccaaacgcattgtaaatgttcaagctttgttgtggccatatctctaaccctatgtt |
364 |
Q |
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| T |
52767788 |
ccactccaaacgcattgtaaatgttcaagctttgttgtggccatatctctaaccctttgtt |
52767848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 7418510 - 7418666
Alignment:
| Q |
75 |
tgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacattgaaaccctcgacttttacaacaagttctgcatctta |
174 |
Q |
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| T |
7418510 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
7418609 |
T |
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| Q |
175 |
gatgtatacaatctttctttgcttggttaccacagtcctgacaattcattcctccac |
231 |
Q |
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| T |
7418610 |
gatgtggacaatctttcttagcttggttaccacaatcttgacagttcattccaccac |
7418666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 218
Target Start/End: Complemental strand, 32483108 - 32482965
Alignment:
| Q |
75 |
tgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacattgaaaccctcgacttttacaacaagttctgcatctta |
174 |
Q |
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|||||||| |||||||||||| ||| ||| ||||||||||| || |||||||| |||||||| ||||| || ||||| |||||||||||||| ||||| | |
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| T |
32483108 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaaaccacgactcttacaacaagttctacatctca |
32483009 |
T |
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| Q |
175 |
gatgtatacaatctttctttgcttggttaccacagtcctgacaa |
218 |
Q |
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| T |
32483008 |
tgtgaggacaatctttcttagcttggttaccacaatcttgacaa |
32482965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 8102002 - 8101881
Alignment:
| Q |
97 |
tagcagcgggaacccaagtactcttaacatgtgtttgacattgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgc |
196 |
Q |
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||||||| ||||||||||||||||||||||| |||||||| | ||| |||| ||| |||||||||||||| ||||| | ||| |||||||||||| || |
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| T |
8102002 |
tagcagcaggaacccaagtactcttaacatgagtttgacaatcaaaacctctactcttacaacaagttctacatctcatatgaggacaatctttcttagc |
8101903 |
T |
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| Q |
197 |
ttggttaccacagtcctgacaa |
218 |
Q |
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||| || ||||| || |||||| |
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| T |
8101902 |
ttgattcccacaatcttgacaa |
8101881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 39019366 - 39019486
Alignment:
| Q |
97 |
tagcagcgggaacccaagtactcttaacatgtgtttgacattgaaaccctcgacttttacaacaagttctgcatcttagatgtatacaatctttctttgc |
196 |
Q |
| |
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||||||| || |||||||||||||||||||| || | || | ||| |||| |||||||||||||||||| || ||| || |||||||||||||||| |
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| T |
39019366 |
tagcagcaggtacccaagtactcttaacatgagtagggcaatcaaaacctctacttttacaacaagttctacaccttctattactacaatctttctttgc |
39019465 |
T |
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| Q |
197 |
ttggttaccacagtcctgaca |
217 |
Q |
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|||||| ||||| || ||||| |
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| T |
39019466 |
ttggtttccacaatcttgaca |
39019486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 13800563 - 13800522
Alignment:
| Q |
7 |
gattagtttctgtgtgtcgtttgtaattgtctccatgatctc |
48 |
Q |
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| T |
13800563 |
gattaatttatgtgtgtcgtttgtaattgtctccatgatctc |
13800522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 25570299 - 25570259
Alignment:
| Q |
8 |
attagtttctgtgtgtcgtttgtaattgtctccatgatctc |
48 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||| |
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| T |
25570299 |
attaatttatgtgtgtcgtttgtaattgtctccatgatctc |
25570259 |
T |
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