View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14545_low_12 (Length: 349)
Name: NF14545_low_12
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 935483 - 935799
Alignment:
| Q |
19 |
gctattacatgagagtgaaaattaaacaggattcaatttcttgaatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgttggg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935483 |
gctattacatgagagtgaaaattaaacaggattcaatttcttgaatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgttggg |
935582 |
T |
|
| Q |
119 |
acaaagataacatcaggaatggatttggtaacacttcgttgagtcacaggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctgg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935583 |
acaaagataacatcaggaatggatttggtaacacttcgttgaggcacaggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctgg |
935682 |
T |
|
| Q |
219 |
tgatcatcatagaatcatctacattactcatatttacattcttaatcatgaaatcagtggtaattatatatatacttgttagacttttggttcaagcaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935683 |
tgatcatcatagaatcatctacattactcatatttacattcttaatcatgaaatcagtggtaattatatatatacttgttagacttttggttcaagcaag |
935782 |
T |
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| Q |
319 |
ggttgccgttattcatt |
335 |
Q |
| |
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|||| |||||||||||| |
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| T |
935783 |
ggtttccgttattcatt |
935799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 937269 - 937513
Alignment:
| Q |
30 |
agagtgaaaattaaacaggattcaatttcttgaatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgttgggacaaagataac |
129 |
Q |
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| T |
937269 |
agagagaaaattaaataggattcaatttcttcaatgacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataac |
937368 |
T |
|
| Q |
130 |
atcaggaatggatttggtaacacttcgttgagtcacaggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcata |
229 |
Q |
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||||||||||| ||| |||||||| |||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
937369 |
atcaggaatggctttcataacacttagttgaggcacagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcata |
937468 |
T |
|
| Q |
230 |
gaatcatctacattactcatatttacattcttaatcatgaaatca |
274 |
Q |
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||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
937469 |
gaatcatctactttgcttatatttacattcttaatcatgaaatca |
937513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 7584356 - 7584254
Alignment:
| Q |
175 |
tgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcatagaatcatctacattactcatatttacattcttaatcatgaaatca |
274 |
Q |
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||||||| |||||| ||||||||||| ||||| ||||||| ||||||||||| |||||||||| ||||| ||||||| |||||||| |||||||||| |
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| T |
7584356 |
tgttctcttagctatcatagctgctgtaggtgatactattccattgatcatcatataatcatctactttactaatatttatattcttaaccatgaaatca |
7584257 |
T |
|
| Q |
275 |
gtg |
277 |
Q |
| |
|
||| |
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| T |
7584256 |
gtg |
7584254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 7584470 - 7584365
Alignment:
| Q |
37 |
aaattaaacaggattcaatt--tcttgaatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcag |
134 |
Q |
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|||||||| ||||||||||| ||||||| |||||||||| | || ||||||| ||| |||||| ||||||||| |||||||||| | ||||||||| |
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| T |
7584470 |
aaattaaataggattcaatttatcttgaaagacattctttagatgacttttacagtaatgagagccaaaactgtagttgttgggacagatataacatcaa |
7584371 |
T |
|
| Q |
135 |
gaatgg |
140 |
Q |
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|||||| |
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| T |
7584370 |
gaatgg |
7584365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 7586030 - 7585961
Alignment:
| Q |
46 |
aggattcaatttcttgaatgacattctttctgtaacctttacagcaataagagcctaaactgtagctgtt |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||| | || |||| |||||| |||||| ||| |||||||||| |
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| T |
7586030 |
aggattcaatttcttaaatgacattcttttgatgacttttatagcaatgagagccaaaattgtagctgtt |
7585961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 7579371 - 7579323
Alignment:
| Q |
169 |
ttgtcctgttctcgtagcta-ccatagctgctggaggtgccactattct |
216 |
Q |
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||||| ||||||| |||||| ||||||||||||||||||||| |||||| |
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| T |
7579371 |
ttgtcttgttctcttagctaaccatagctgctggaggtgccaatattct |
7579323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 38410495 - 38410442
Alignment:
| Q |
86 |
acagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatg |
139 |
Q |
| |
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|||||||| |||||| |||||||||||| || ||||||||||||||||||||| |
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| T |
38410495 |
acagcaatgagagccaaaactgtagctgagggaacaaagataacatcaggaatg |
38410442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 38410409 - 38410308
Alignment:
| Q |
169 |
ttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcatagaatcatctacattactcatatttacattcttaatcatg |
268 |
Q |
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|||||||||||| |||| || || |||||||| ||||||||||||| | ||| |||||||| |||||||| || | | ||| ||||||||| ||||| |
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| T |
38410409 |
ttgtcctgttcttttagccactatggctgctggtggtgccactattccagcgattatcatagattcatctactttgttgagattcacattcttattcatg |
38410310 |
T |
|
| Q |
269 |
aa |
270 |
Q |
| |
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|| |
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|
| T |
38410309 |
aa |
38410308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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