View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14545_low_14 (Length: 332)
Name: NF14545_low_14
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 5 - 317
Target Start/End: Complemental strand, 12387509 - 12387198
Alignment:
| Q |
5 |
gaagaatatatgttttttaagggaaacaatgcaggagtatgctagagaagttgaaaagctagcttataagttattggagttgattttattgagcttaggc |
104 |
Q |
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| T |
12387509 |
gaagaatatgtgtctttta-gggaaacaatgcaggagtatgctagagaagttgaaaagctagcttataagttattggagttgattttattgagcttaggc |
12387411 |
T |
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| Q |
105 |
atagctggtgaaaaatttcatgactgcttcaagaaccaactaagcttggtgaggctcaatcactatcctctatgcccttcccctgatttggcacttggtg |
204 |
Q |
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| T |
12387410 |
ataggtggtgaaaaatttcatgactgcttcaagaaccaactaagcttggtgaggctcaatcactatcctccatgcccttcccctgatttggcacttggtg |
12387311 |
T |
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| Q |
205 |
ttggtcgtcacaaggattctagtgctttgactgtgcttgcacaagatgatattggtggcttacaagttaggagaaaatcagttggtgattggattccagt |
304 |
Q |
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| T |
12387310 |
ttggtcgtcacaaggattctagtgctttgactgtgcttgcacaagatgatattggtggcttacaagttaggagaaaatcagttggtgattggattccagt |
12387211 |
T |
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| Q |
305 |
taaacctactcct |
317 |
Q |
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| T |
12387210 |
taaacctactcct |
12387198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 12323287 - 12323201
Alignment:
| Q |
206 |
tggtcgtcacaaggattctagtgctttgactgtgcttgcacaagatgatattggtggcttacaagttaggagaaaatcagttggtga |
292 |
Q |
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| T |
12323287 |
tggtcgccacaaagattctggtgctttaactgttcttgctcaagatgaagttagtggattagaagtgaggagaaaatctgatggtga |
12323201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 12374234 - 12374148
Alignment:
| Q |
206 |
tggtcgtcacaaggattctagtgctttgactgtgcttgcacaagatgatattggtggcttacaagttaggagaaaatcagttggtga |
292 |
Q |
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| T |
12374234 |
tggtcgccacaaagattctggtgctttaactgttcttgctcaagatgaagttagtggattagaagtgaggagaaaatctgatggtga |
12374148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 34120018 - 34119904
Alignment:
| Q |
193 |
tggcacttggtgttggtcgtcacaaggattctagtgctttgactgtgcttgcacaagatgatattggtggcttacaagttaggagaaaatcagttggtga |
292 |
Q |
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| T |
34120018 |
tggctcttggtctcggacgtcacaaggacactggtgtcttaactgtgcttgctcaagatgatgttggtggtttgcaagttaagagaaaatcagatggaga |
34119919 |
T |
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| Q |
293 |
ttggattccagttaa |
307 |
Q |
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||||||| |||||| |
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| T |
34119918 |
gtggattcaagttaa |
34119904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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