View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14545_low_15 (Length: 327)
Name: NF14545_low_15
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 38723326 - 38723014
Alignment:
| Q |
1 |
catgacagtgttgaagggtatgctcattttattttttctactctttgaacaaaattagtagatagaattaaatataagtgggcactaattttttgtggaa |
100 |
Q |
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| T |
38723326 |
catgacagtgttgaagggtatgctcattttattttttctactctttgaacaaaattagtagatagaattaaatataagtgggcactaattttttgtggaa |
38723227 |
T |
|
| Q |
101 |
ctatatcaggaactggagtagttgtattatgggaccccaatttcaaactatgatcaaataaggtgtaatcaattaatgtacatatcagattgaagataat |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38723226 |
ctatatcaggaactggagtaattgtattatgggaccccaatttcaaactatgatcaaataaggtgtaatcaattaatgtacatatcagattgaagataat |
38723127 |
T |
|
| Q |
201 |
ccattgacattggggatggattttggcacagaaggaagaaaattggttaagttcatacctgtaatccattttcaaaatgctcaaatttggtgtagtggtc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38723126 |
ccattgacattggggatggattttggcacagaaggaagaaaattggttaagttcatagctgtaatccattttcaaaatgctcaaatttggtgtagtggtc |
38723027 |
T |
|
| Q |
301 |
actcaggtctgtg |
313 |
Q |
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||||||||||||| |
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| T |
38723026 |
actcaggtctgtg |
38723014 |
T |
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