View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14545_low_17 (Length: 314)

Name: NF14545_low_17
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14545_low_17
NF14545_low_17
[»] chr6 (3 HSPs)
chr6 (122-295)||(33633583-33633757)
chr6 (14-124)||(33633807-33633920)
chr6 (60-124)||(12525394-12525457)
[»] chr5 (3 HSPs)
chr5 (128-299)||(33542273-33542445)
chr5 (50-128)||(33542496-33542573)
chr5 (99-127)||(11433515-11433543)
[»] scaffold0004 (2 HSPs)
scaffold0004 (128-292)||(91175-91341)
scaffold0004 (96-128)||(91393-91425)
[»] chr3 (5 HSPs)
chr3 (122-232)||(1300739-1300849)
chr3 (49-127)||(1300896-1300973)
chr3 (130-232)||(1049192-1049295)
chr3 (126-225)||(1076074-1076169)
chr3 (52-127)||(1075949-1076023)
[»] chr8 (2 HSPs)
chr8 (127-296)||(34051485-34051658)
chr8 (49-125)||(34051356-34051431)
[»] chr4 (1 HSPs)
chr4 (56-124)||(793707-793774)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 122 - 295
Target Start/End: Complemental strand, 33633757 - 33633583
Alignment:
Q  122 aagtagcttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataaccaaacagatgcagagttg 221  Q
    ||||||||||||||  ||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  33633757 aagtagcttaaatatcgagtgctccatatgcttgaaaattcggttgtttctttcaccctaaattacttaaacaccagataaccaaacagatgcagagttg 33633658  T
Q  222 acc-gttaatgtttagaaaatcctcctaaatgatcaaattgacataaatgatcggtaatgatagctggactcaca 295  Q
    |||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33633657 accatttgatgtttagaaaatcctcctaaatgatcaaattgacataaatgatcggtaatgataactggactcaca 33633583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 33633920 - 33633807
Alignment:
Q  14 acaaagtctaaaaaggaaccaaaatgagagaaattaagatacaaatt---aagtaataactttcaaacattattttggattaagcccaccaagaatggta 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  33633920 acaaagtctaaaaagggaccaaaatgagagaaattaagatacaaatttttaagtaataactttcaaacattattttggattaagcccatcaaaaatggta 33633821  T
Q  111 atcaaaagagaaag 124  Q
    ||||||||||||||    
T  33633820 atcaaaagagaaag 33633807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 12525457 - 12525394
Alignment:
Q  60 taagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaag 124  Q
    ||||||||||||| ||| ||| |||||||||||||  || ||| |||||||||||||||||||||    
T  12525457 taagtaataacttacaagcataattttggattaag-tcatcaaaaatggtaatcaaaagagaaag 12525394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 128 - 299
Target Start/End: Complemental strand, 33542445 - 33542273
Alignment:
Q  128 cttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataacc-aaacagatgcagagttgaccgt 226  Q
    ||||||||||||||| |||||||| |||||||||   ||||||||||||||| |||||||||||||||||||||||| ||| |||||| |||||||||      
T  33542445 cttaaataaagagtgttccttatgcttgaaaattgaattgtttctttcactccaaattacttaaacacaagataaccaaaagagatgccgagttgaccac 33542346  T
Q  227 taatgtttagaaaatcctcctaaatgatcaaattgacataaatgatcggtaatgatagctggactcacataaa 299  Q
    | ||||||| |||||||| |||| ||| | ||||||  ||| |||||||||||||||||||||||||||||||    
T  33542345 tgatgtttaaaaaatccttctaattgaccgaattgatgtaactgatcggtaatgatagctggactcacataaa 33542273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 33542573 - 33542496
Alignment:
Q  50 agatacaaattaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaagtagc 128  Q
    ||||||||||||||||||  |||||||  || ||||||||||||| |||| |||||||||||| |||||||||||||||    
T  33542573 agatacaaattaagtaattgctttcaagaataattttggattaag-ccactaagaatggtaattaaaagagaaagtagc 33542496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 11433543 - 11433515
Alignment:
Q  99 ccaagaatggtaatcaaaagagaaagtag 127  Q
    |||||||||||||||||||||||||||||    
T  11433543 ccaagaatggtaatcaaaagagaaagtag 11433515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 292
Target Start/End: Complemental strand, 91341 - 91175
Alignment:
Q  128 cttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataaccaaac-agatgcagagttgaccgt 226  Q
    ||||||||||||||| | |||||| || |||||  |||||||||| |||||| |||||||  ||||||||||||| ||||  ||||||||||||||| |     
T  91341 cttaaataaagagtgcttcttatgcttaaaaatctggttgtttctatcactccaaattacacaaacacaagataatcaaaagagatgcagagttgacagg 91242  T
Q  227 taatgtttagaaaatcctcctaaatgatcaaattgacat-aaatgatcggtaatgatagctggactc 292  Q
    | ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| | |||||||    
T  91241 tgatgtttagaaaatcctcataaatgaccaaattgacataaaatgatcggtaatgattgttggactc 91175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 91425 - 91393
Alignment:
Q  96 ccaccaagaatggtaatcaaaagagaaagtagc 128  Q
    |||||||||||||||||||||||||||||||||    
T  91425 ccaccaagaatggtaatcaaaagagaaagtagc 91393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 1300849 - 1300739
Alignment:
Q  122 aagtagcttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataacc-aaacagatgcagagtt 220  Q
    ||||||||||||||||||||| |||||||  |||||||||||| |||||||||||||| |||||||| ||||| ||||||||| ||| ||||||||||||    
T  1300849 aagtagcttaaataaagagtg-tccttatacttgaaaattcggctgtttctttcactccaaattactcaaacataagataaccaaaagagatgcagagtt 1300751  T
Q  221 gaccgttaatgt 232  Q
    ||||| ||||||    
T  1300750 gaccgctaatgt 1300739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 1300973 - 1300896
Alignment:
Q  49 aagatacaaattaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaagtag 127  Q
    |||||||||| ||||||||| ||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  1300973 aagatacaaactaagtaatagctttcaagcataagtttggattaagcc-accaagaatggtaatcaaaagagaaagtag 1300896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 1049192 - 1049295
Alignment:
Q  130 taaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataac-caaacagatgcagagttgaccgtta 228  Q
    |||||||| |||| | ||||| ||| |||||||||||||||||| ||||| |||||||  ||||||||||||||  ||| |||||||||||||||||||     
T  1049192 taaataaatagtgcttcttatatttaaaaattcggttgtttcttacactccaaattacccaaacacaagataactaaaagagatgcagagttgaccgttg 1049291  T
Q  229 atgt 232  Q
    ||||    
T  1049292 atgt 1049295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 1076074 - 1076169
Alignment:
Q  126 agcttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataacc-aaacagatgcagagttgacc 224  Q
    |||||||||||||||||    | ||| |||||||||||| | ||||| ||||||||||||||  ||||||||||||||| ||| ||||||| ||||||||    
T  1076074 agcttaaataaagagtg----tcatgattgaaaattcggctatttctgtcactctaaattac-caaacacaagataaccaaaagagatgcaaagttgacc 1076168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 1075949 - 1076023
Alignment:
Q  52 atacaaattaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaagtag 127  Q
    ||||||| ||||||||| |||| || ||| | |||||||||| || ||||| ||||||||||||||||||| ||||    
T  1075949 atacaaactaagtaatagctttaaagcataagtttggattaaacc-accaaaaatggtaatcaaaagagaaggtag 1076023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 296
Target Start/End: Original strand, 34051485 - 34051658
Alignment:
Q  127 gcttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataacc-aaacagatgcagagttga--- 222  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||| ||   |||  |||||||||| ||| ||| |  |||||||       
T  34051485 gcttaaataaagagtgatccgtatgcttgaaaatttggttgtttctttccctctaaagtatccaaatgcaagataaccaaaagagaagttgagttgactg 34051584  T
Q  223 ccgttaatgtttagaaaatcctcctaaatgatc-aaattgacataaatgatcggtaatgatagctggactcacat 296  Q
    | | | ||||||||||||| ||||||||| ||| ||| |||| |||||||||| ||||||||||||||| |||||    
T  34051585 ctgctgatgtttagaaaattctcctaaat-atctaaactgacgtaaatgatcgataatgatagctggacacacat 34051658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 34051356 - 34051431
Alignment:
Q  49 aagatacaaattaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaagt 125  Q
    |||||||||| | || |||||||||||| ||| ||||||||||||| | ||||||||| ||||||| ||||||||||    
T  34051356 aagatacaaaatgagcaataactttcaagcataattttggattaag-ctaccaagaatagtaatcagaagagaaagt 34051431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 793774 - 793707
Alignment:
Q  56 aaattaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaag 124  Q
    ||||||||||||||||| ||| ||| |||||||||||||  || ||| |||||||||||||||| ||||    
T  793774 aaattaagtaataacttacaagcataattttggattaag-tcatcaaaaatggtaatcaaaagaaaaag 793707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University