View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14545_low_19 (Length: 271)

Name: NF14545_low_19
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14545_low_19
NF14545_low_19
[»] chr3 (3 HSPs)
chr3 (18-124)||(1829694-1829800)
chr3 (128-256)||(1829240-1829373)
chr3 (149-209)||(51039754-51039814)
[»] chr7 (3 HSPs)
chr7 (148-209)||(33922787-33922848)
chr7 (165-210)||(35567129-35567174)
chr7 (157-209)||(34681699-34681751)
[»] chr1 (2 HSPs)
chr1 (146-210)||(44442246-44442310)
chr1 (165-209)||(26857238-26857282)
[»] scaffold0219 (1 HSPs)
scaffold0219 (148-210)||(21306-21368)
[»] chr4 (2 HSPs)
chr4 (146-204)||(19597202-19597260)
chr4 (145-210)||(51105917-51105982)
[»] chr8 (2 HSPs)
chr8 (146-259)||(12639926-12640043)
chr8 (170-210)||(42022639-42022679)
[»] chr6 (1 HSPs)
chr6 (170-210)||(12307845-12307885)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 1829800 - 1829694
Alignment:
Q  18 ataatttcgtgtttggattaaggtgagttttgaatagtggttaaccttcgggttttcaagtaaaaaagatcctgtcaaaagataaataaaattcgactaa 117  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  1829800 ataatttcctgttcggattaaggtgagttttgaatagtggttaaccttcgggttttcaagtaaaaaggatccggtcaaaagataaataaaattcgactaa 1829701  T
Q  118 gaatctt 124  Q
    |||||||    
T  1829700 gaatctt 1829694  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 1829373 - 1829240
Alignment:
Q  128 aacgaaggtctctcaaatactttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaat----agaatacacaagtt 223  Q
    ||||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     |||||||||| ||    
T  1829373 aacgagggcctctgaaacactttttaaatattctaagttagtaaattattttttaaaaatatcaaatagtttaattttcaatgtactgaatacacaaatt 1829274  T
Q  224 ttcgc-aaaagttactattttaaacccttaaaga 256  Q
    ||||| ||||||||| |||||||| |||||||||    
T  1829273 ttcgcaaaaagttaccattttaaatccttaaaga 1829240  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 51039754 - 51039814
Alignment:
Q  149 ttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaat 209  Q
    ||||||||||| ||| |||  |||||||| | |||||| ||||||||||| ||||||||||    
T  51039754 ttttaaatattttaaattaaaaaattattctataaaaaagtcaaatagttcaattttcaat 51039814  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 33922848 - 33922787
Alignment:
Q  148 tttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaat 209  Q
    |||||||  ||||||| |||| |||||||| |||||||| ||||||||||| ||||||||||    
T  33922848 tttttaagcattctaaattagaaaattattctttaaaaaagtcaaatagttcaattttcaat 33922787  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 35567129 - 35567174
Alignment:
Q  165 ttagtaaattattttttaaaaatgtcaaatagtttaattttcaata 210  Q
    |||| ||||||||||||||||| |||||||| |||||||| |||||    
T  35567129 ttagaaaattattttttaaaaaagtcaaatattttaatttccaata 35567174  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 34681699 - 34681751
Alignment:
Q  157 attctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaat 209  Q
    ||||||| |||| ||||||||||||| ||| ||||||||||| ||||| ||||    
T  34681699 attctaaattaggaaattattttttacaaaagtcaaatagttcaatttccaat 34681751  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 44442246 - 44442310
Alignment:
Q  146 actttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaata 210  Q
    ||||||||| |||| ||| |||| |||||||| |||||||| |||||||| || |||||||||||    
T  44442246 actttttaagtattttaaattaggaaattattctttaaaaaagtcaaatatttcaattttcaata 44442310  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 26857282 - 26857238
Alignment:
Q  165 ttagtaaattattttttaaaaatgtcaaatagtttaattttcaat 209  Q
    |||| |||||||| |||||||| || |||||||||||||||||||    
T  26857282 ttagaaaattattctttaaaaaagttaaatagtttaattttcaat 26857238  T

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Target: scaffold0219 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 21368 - 21306
Alignment:
Q  148 tttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaata 210  Q
    |||||||  ||||||| |||  |||||||||||||||||||| ||||| ||||||||| ||||    
T  21368 tttttaagaattctaaattaagaaattattttttaaaaatgttaaatattttaatttttaata 21306  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 19597260 - 19597202
Alignment:
Q  146 actttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattt 204  Q
    |||||||||  ||||||  |||| |||||||| |||||||||||||||||||| |||||    
T  19597260 actttttaagcattctacattaggaaattattctttaaaaatgtcaaatagttcaattt 19597202  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 51105917 - 51105982
Alignment:
Q  145 tactttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaata 210  Q
    |||| ||||||||||||||  ||   ||||||| |||||||| |||||||| ||||||||||||||    
T  51105917 tactctttaaatattctaaaataaacaattattatttaaaaaagtcaaatattttaattttcaata 51105982  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 12639926 - 12640043
Alignment:
Q  146 actttttaaatattctaagttagtaaattattttttaaaaatgtcaaatagtttaattttcaata----gaatacacaagttttcgcaaaagttactatt 241  Q
    |||||||||  ||||||| |||| |||||| || ||||||| || ||||| ||  |||||||| |    || ||||||| |||||  |||| |||||| |    
T  12639926 actttttaagcattctaaattaggaaattaattattaaaaaagttaaataattcgattttcaaaacattgattacacaacttttcataaaaattactact 12640025  T
Q  242 ttaaacccttaaagattg 259  Q
    ||||||||||||||||||    
T  12640026 ttaaacccttaaagattg 12640043  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 42022679 - 42022639
Alignment:
Q  170 aaattattttttaaaaatgtcaaatagtttaattttcaata 210  Q
    ||||||||||||||||| ||||||||||| ||||| |||||    
T  42022679 aaattattttttaaaaaagtcaaatagttcaatttccaata 42022639  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 12307845 - 12307885
Alignment:
Q  170 aaattattttttaaaaatgtcaaatagtttaattttcaata 210  Q
    |||||||||| |||||| |||||||| ||||||||||||||    
T  12307845 aaattattttataaaaaagtcaaatattttaattttcaata 12307885  T

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