View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14545_low_2 (Length: 653)
Name: NF14545_low_2
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 610; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 25 - 638
Target Start/End: Original strand, 9451571 - 9452184
Alignment:
| Q |
25 |
aaaaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagttaatccaaacaaaacaagttttgtgacaattgaaatcatt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9451571 |
aaaaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagttaatccaaacaaaacaagttttgtgacaattgaaatcatt |
9451670 |
T |
|
| Q |
125 |
tatacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattgaaatgatttatacatagttgatatttattataacatatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9451671 |
tatacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattgaaatgatttatacatagttgatatttattataacatatt |
9451770 |
T |
|
| Q |
225 |
tctacggttaatccaaacacaacaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatccttt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9451771 |
tctacggttaatccaaacacaacaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatccttt |
9451870 |
T |
|
| Q |
325 |
ttcttgttaaatgggaaaggtctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttggtttcaggcactaacaaataaatggcta |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9451871 |
ttcttgttaaatgggaaaggtctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttggtttcaggcactaacaaataaatggcta |
9451970 |
T |
|
| Q |
425 |
caaggccaatcaaagagaaccctgcaaagaggaggaatgttccggtagttcctagagcctttatcatgctcaagaatgactcactcacaattagattagc |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9451971 |
caaggccaatcaaagagaaccctgcaaagaggaggaatgttccggtagttcctagagcctttatcatgctcaagaatgactcactcacaattagattggc |
9452070 |
T |
|
| Q |
525 |
acaccagttgaaaactgctgctatacctccacctattcctctgaaccgcaatggataaatctccgagtttagaacccaaggcactgttccaattccagga |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9452071 |
acaccagttgaaaactgctgctatacctccacctattcctctgaaccgcaatggataaatctccgagtttagaacccaaggcactgttccaattccagga |
9452170 |
T |
|
| Q |
625 |
gcatatgctatgat |
638 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9452171 |
gcatatgctatgat |
9452184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 246 - 631
Target Start/End: Original strand, 9440567 - 9440951
Alignment:
| Q |
246 |
acaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatcctttttcttgttaaatgggaaaggt |
345 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||| |||||| || | || ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9440567 |
acaagttgtgtcttgaacaaaa-gacataacaatcaagctatgtgtttcacttcctccttccctttgtcatcatcctttttcttgttaaatgggaaaggt |
9440665 |
T |
|
| Q |
346 |
ctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttggtttcaggcactaacaaataaatggctacaaggccaatcaaagagaacc |
445 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9440666 |
ctaaaccctttctgaagcaatttctcaacctcctcaaactgaagacctttggtttcaggcaccaacaaataaatggctacaaatccaatcaaagagaacc |
9440765 |
T |
|
| Q |
446 |
ctgcaaagaggaggaatgttccggtagttcctagagcctttatcatgctcaagaatgactcactcacaattagattagcacaccagttgaaaactgctgc |
545 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
9440766 |
ctgcaaaggtgaggaatgttccagtagttcctagagtctttatcatgcttaagaatgactcactcataattacattagcacaccagttgaaaactgctgc |
9440865 |
T |
|
| Q |
546 |
tatacctccacctattcctctgaaccgcaatggataaatctccgagtttagaacccaaggcactgttccaattccaggagcatatg |
631 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9440866 |
tatacctccacctattcctctgaaccttaaaggataaatctccgagtttagaacccaaggcactgttccgattccaggagcatatg |
9440951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University