View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14545_low_20 (Length: 266)
Name: NF14545_low_20
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 34965259 - 34965490
Alignment:
| Q |
19 |
gaaatattgtatataaaataaattagaaaatttaaaaatggagtgaaacgttactcaccaccattggttgcaacaagaaataggaaaagaaagatgatca |
118 |
Q |
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| T |
34965259 |
gaaatattgtatataaaataaattagaaaatttaaaaatggagtgaaacgttactcaccaccattggttgcaacaagaaataggaaaagaaagatgatca |
34965358 |
T |
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| Q |
119 |
aagcgtaaaataaacttatgactcgagccatatttttcttcttttgatgtaataaataaaaatttgtttgataactttatagaagcaattgcatgcgttg |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34965359 |
aagcataaaataaacttatgactcgagccatatttttcttcttttgatgtaataaataaaaatttgtttgataactttatagaagcaattgcatgcgttg |
34965458 |
T |
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| Q |
219 |
ttaacctcaatgaaatattttttagccctttg |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34965459 |
ttaacctcaatgaaatattttttagccctttg |
34965490 |
T |
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Back To:
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 23392737 - 23392631
Alignment:
| Q |
21 |
aatattgtatataaaataaattagaaaatttaaaaatggagtgaaacgttactcaccaccattggttgcaacaagaaataggaaaagaaagatgatcaaa |
120 |
Q |
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|||||||||| ||| ||||||| ||||| || ||||||| |||||| | || ||||| |||||| ||||||||||||| ||||||||||||| ||| |
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| T |
23392737 |
aatattgtatgtaagataaatttgaaaaattgaaaatggtgtgaaagatgacataccactgttggtttcaacaagaaatagagaaagaaagatgattaaa |
23392638 |
T |
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| Q |
121 |
gcgtaaa |
127 |
Q |
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| ||||| |
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| T |
23392637 |
gtgtaaa |
23392631 |
T |
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