View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14545_low_21 (Length: 252)
Name: NF14545_low_21
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_low_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 35475162 - 35474923
Alignment:
| Q |
13 |
aaaataaagtgaggaacacaccaaaacttaattagcaactaaattagaaatctcttcacgtagaaaacttcatgcagtggctcaaaatgatggcatgaat |
112 |
Q |
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| T |
35475162 |
aaaataaagtgaggaacacaccaaaacttaattagcaactaaattagaaatctcttcacgtagaaaacttcatgcagtggctcaaaatgatggcatgaat |
35475063 |
T |
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| Q |
113 |
tcaaagccttggttcaaaagagcaccagccacccatagcttcaaattttgaaggttcatttctggttcagaaccgtttacctatatttttcaacccaaca |
212 |
Q |
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| T |
35475062 |
tcaaagccttggttcaaaagagcaccagccacccatagcttcaaattttgaaggttcatttctggttcagaaccgtttacctatatttttcaacccaaca |
35474963 |
T |
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| Q |
213 |
atgactaattaatctttaagcaaaaacatcaataacccta |
252 |
Q |
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| T |
35474962 |
atgactaattaatctttaagcaaaaacatcaataacccta |
35474923 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 20950628 - 20950704
Alignment:
| Q |
107 |
atgaattcaaagccttggttcaaaagagcaccagccacccatagcttcaaattttgaaggttcatttctggttcaga |
183 |
Q |
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|||||||||||||||||||| | || ||||| | |||||||||||| |||||| | ||||| ||||||||| |||| |
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| T |
20950628 |
atgaattcaaagccttggtttagaaaagcactaatcacccatagctttaaatttggcaggttaatttctggtccaga |
20950704 |
T |
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