View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14545_low_24 (Length: 244)
Name: NF14545_low_24
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 38 - 231
Target Start/End: Original strand, 18448051 - 18448240
Alignment:
| Q |
38 |
ttgaaatatataaaatccaaaacttagctgatcataaacgaagcaagaaaaaagtggcttttggg-ttgaagtactctctacccaccccaaaacattaac |
136 |
Q |
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| T |
18448051 |
ttgaaatgtataaaatccaaaacttaactgatcatatacgaagcaagaaaaaagtggctattgggattgaagtactgt--acccaccccaaaacaataac |
18448148 |
T |
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| Q |
137 |
actcattaatgtgatacgtacgatgtattgcaaactcacctggtaagtgaaactatataagatgatgatagatagtttatgtgaatgactgatat |
231 |
Q |
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| T |
18448149 |
actcattaatgtgatatgtacgatgtattgcaaactcacctggtaagtgaaactatataa---gatgatagatagtttatgtgaatgactgatat |
18448240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 18465289 - 18465401
Alignment:
| Q |
116 |
tacccaccccaaaacattaacactcattaatgtgatacgtacgatgtattgcaaactcacctggtaagtgaaactatataagatgatgatagatagttta |
215 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18465289 |
tacccaccccaaaacaataacactcattaatgtgatacgtacgatgtattgcaaactcacctggtaagtgaaactatataa---gatgatagatagttta |
18465385 |
T |
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| Q |
216 |
tgtgaatgactgatat |
231 |
Q |
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| T |
18465386 |
tgtgaatgactgatat |
18465401 |
T |
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