View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14545_low_27 (Length: 223)
Name: NF14545_low_27
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14545_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 40989802 - 40989609
Alignment:
| Q |
18 |
aggctcacattgcacataagtccacaagttatatttgaggtgagtcaaatatactttacacttcatgtctctatttctctcaatatttaacatagtagtc |
117 |
Q |
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| T |
40989802 |
aggctcacatttcacataagtccacaagttatatttgaggtgagtcaaatatactttacacttcaagtctctatttctctcaatatttaacatagtagtc |
40989703 |
T |
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| Q |
118 |
a-ttgatgtatagttatatgctttggtttttaacacttttgaatgtttgctcgtatatattagaggacc----atacacttccatatcatgttga |
207 |
Q |
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| T |
40989702 |
atttgatgtatagttatatgctttgg-gtttaacacttttgaatgtttgctcgtatatattagaggaccatatatacacttccatatcatgttga |
40989609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 40986424 - 40986244
Alignment:
| Q |
21 |
ctcacattgcacataagtccacaagttatatttgaggtgagtcaaatatactttacacttcatgtctcta--tttctctcaatatttaacatagtagtca |
118 |
Q |
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| T |
40986424 |
ctcacattggacataagtcaacaagttatatttaaggtgagtcaaatac-cgttacatttcatgtctctcattttctctcaatattttacatagtagtta |
40986326 |
T |
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| Q |
119 |
ttgatgtatagttatatgctttggtttttaacacttttgaatgtttgctcgtatatattagaggaccatacacttccatatc |
200 |
Q |
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| T |
40986325 |
ttgaaatatagttatgtggtttgatttttaacacttttgaatgttttctcgtatacattacaggactatagacttccctatc |
40986244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 40994185 - 40994020
Alignment:
| Q |
24 |
acattgcacataagtccacaagttatatttgaggtgagtcaaatatactttacacttcatgtctctatttctctc---aatatttaacata----gtagt |
116 |
Q |
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| T |
40994185 |
acattggacataagtccacaagttatatttgaggtgagtaaaata--ctttacatttcatgtctctctttttctctcaaatatttaacatatatagtagt |
40994088 |
T |
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| Q |
117 |
cattgatgtatagttatatgctttggtttttaacacttttgaatgtttgctcgtatatattagaggac |
184 |
Q |
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| T |
40994087 |
cattgatatatagttatatggtttgatttttaacacttttgaatgtttggttgtatatattacaggac |
40994020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 21180841 - 21180910
Alignment:
| Q |
132 |
atatgctttggtttttaacacttttgaatgtttgctcgtatatattagaggaccatacacttccatatca |
201 |
Q |
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| T |
21180841 |
atatggtttgatttttaatacttttgaatgattggttgtatatattacaggactatacacttccctatca |
21180910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 21180751 - 21180798
Alignment:
| Q |
21 |
ctcacattgcacataagtccacaagttatatttgaggtgagtcaaata |
68 |
Q |
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|||| |||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
21180751 |
ctcatattggacataagtccacaacttatatttgaggtcagtcaaata |
21180798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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