View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14545_low_3 (Length: 524)

Name: NF14545_low_3
Description: NF14545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14545_low_3
NF14545_low_3
[»] chr5 (1 HSPs)
chr5 (18-389)||(21547021-21547392)
[»] chr6 (3 HSPs)
chr6 (392-456)||(16439412-16439480)
chr6 (392-456)||(31534419-31534487)
chr6 (388-456)||(31975062-31975134)
[»] chr4 (3 HSPs)
chr4 (392-456)||(29509374-29509442)
chr4 (392-459)||(50517811-50517882)
chr4 (392-453)||(46862257-46862322)
[»] chr2 (3 HSPs)
chr2 (392-456)||(31846479-31846547)
chr2 (483-524)||(2308439-2308480)
chr2 (403-456)||(42242519-42242576)
[»] chr1 (4 HSPs)
chr1 (392-456)||(47370882-47370950)
chr1 (391-425)||(49452358-49452392)
chr1 (388-425)||(9174618-9174655)
chr1 (403-456)||(2292591-2292648)
[»] chr7 (1 HSPs)
chr7 (391-456)||(42611238-42611307)
[»] chr8 (2 HSPs)
chr8 (392-454)||(18985053-18985119)
chr8 (391-456)||(24082908-24082977)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 21547021 - 21547392
Alignment:
Q  18 gatatgtgtccaacaagtcacaaattgctgcacttaattttatttaaacgatccctatattcaatgcattggtannnnnnnnggtaacaattcaatgcat 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||        ||||| ||||||||||||    
T  21547021 gatatgtgtccaactagtcacaaattgctgcacttaattttatttaaacgatccttatattcaatgcattgatattttttttggtaaaaattcaatgcat 21547120  T
Q  118 gtttgtaactgctatagttaatttccatcccaatttggcaataatttatacttggaaatttcttttgatttctttaaagcgaatatttagccgttaattc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21547121 gtttgtaactgctatagttaatttccatcccaatttggcaataatttatacttggaaatttgttttgatttctttaaagcgaatatttagccgttaattc 21547220  T
Q  218 gttatggcgaataacttccattgatttgattttaacacctaccattaaatataaacttattatatttttcttttcttcgttctcggttgatacaaagaaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  21547221 gttatggcgaataacttccattgatttgattttaacacctaccattaaatataaacatattatatttttcttttcttcgttctcggctgatacaaagaaa 21547320  T
Q  318 ataacgatttgtaattaactacattgatttagtaccattaaannnnnnngacaaaccaaaataaaacttata 389  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||| |||| ||||||||||||    
T  21547321 ataacgatttgtaattaactacattgatttagtaccattaaatttttttgacaagccaagataaaacttata 21547392  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 16439480 - 16439412
Alignment:
Q  392 caaggttctgcaactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcgta 456  Q
    ||||||| | ||||||||||||||| ||||||||    |||||||||||||||||||| ||||||||||    
T  16439480 caaggtttttcaactcgagagtttacctcaactcgttttgtctaggtaaactcgactcgagaactcgta 16439412  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 31534419 - 31534487
Alignment:
Q  392 caaggttctgcaactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcgta 456  Q
    ||||||| ||||||| ||||||||| ||||| ||    ||||| |||||||||||||||||||||||||    
T  31534419 caaggttttgcaacttgagagtttacctcaaatcgttttgtctgggtaaactcgactcaagaactcgta 31534487  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 456
Target Start/End: Original strand, 31975062 - 31975134
Alignment:
Q  388 tagtcaaggttctgcaactcgagagtttatctcaactc-tgtc---taggtaaactcgactcaagaactcgta 456  Q
    ||||||||||| ||||||||||||||||| |||||||| | ||   ||| |||||||||||| ||||||||||    
T  31975062 tagtcaaggttttgcaactcgagagtttacctcaactcgtttcgcatagataaactcgactcgagaactcgta 31975134  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 29509374 - 29509442
Alignment:
Q  392 caaggttctgcaactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcgta 456  Q
    ||||||| ||||||||||||||||| |||||||     |||||||||||||||||||| ||||||||||    
T  29509374 caaggttttgcaactcgagagtttacctcaactaattttgtctaggtaaactcgactcgagaactcgta 29509442  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 459
Target Start/End: Complemental strand, 50517882 - 50517811
Alignment:
Q  392 caaggttctgcaactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcgtatga 459  Q
    ||||||| |||||||||| |||||| ||||||||    || ||||||||||||||||| ||||||| |||||    
T  50517882 caaggttttgcaactcgaaagtttacctcaactcattttgcctaggtaaactcgactcgagaactcatatga 50517811  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 46862257 - 46862322
Alignment:
Q  392 caaggttctgcaactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactc 453  Q
    ||||||| ||||||||||||||||| ||||||||    |||||||||||| |||| || |||||||    
T  46862257 caaggttttgcaactcgagagtttacctcaactcgttttgtctaggtaaattcgattcgagaactc 46862322  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 31846479 - 31846547
Alignment:
Q  392 caaggttctgcaactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcgta 456  Q
    ||||||| ||||||||||||||||||||||||||    || ||||||||||||||||  ||||||||||    
T  31846479 caaggttttgcaactcgagagtttatctcaactcattttgcctaggtaaactcgacttgagaactcgta 31846547  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 2308439 - 2308480
Alignment:
Q  483 tcaatgcttctaaagttccataatatcattttcatctctgtc 524  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  2308439 tcaatgcttctaaagttccataacatcattttcatctatgtc 2308480  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 42242576 - 42242519
Alignment:
Q  403 aactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcgta 456  Q
    |||||||||||||| ||||||||    || ||||||||||||||||| ||||||||||    
T  42242576 aactcgagagtttacctcaactcgctttgcctaggtaaactcgactcgagaactcgta 42242519  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 47370882 - 47370950
Alignment:
Q  392 caaggttctgcaactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcgta 456  Q
    ||||||| ||||||||||||||||| ||||||||    || ||||||||||||||||| ||||||||||    
T  47370882 caaggttttgcaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagaactcgta 47370950  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Original strand, 49452358 - 49452392
Alignment:
Q  391 tcaaggttctgcaactcgagagtttatctcaactc 425  Q
    |||||||| ||||||||||||||||||||||||||    
T  49452358 tcaaggttttgcaactcgagagtttatctcaactc 49452392  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 9174655 - 9174618
Alignment:
Q  388 tagtcaaggttctgcaactcgagagtttatctcaactc 425  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  9174655 tagtcaaggttttgcaactcgagagtttacctcaactc 9174618  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 2292591 - 2292648
Alignment:
Q  403 aactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcgta 456  Q
    |||||||||||||| ||||||||    ||||||||||||||||||||  |||||||||    
T  2292591 aactcgagagtttacctcaactcattttgtctaggtaaactcgactcgggaactcgta 2292648  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 42611307 - 42611238
Alignment:
Q  391 tcaaggttctgcaactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcgta 456  Q
    |||||||| | ||||||||||||||| ||||||||    || ||||||||||||||||| ||||||||||    
T  42611307 tcaaggttttacaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagaactcgta 42611238  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 454
Target Start/End: Complemental strand, 18985119 - 18985053
Alignment:
Q  392 caaggttctgcaactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcg 454  Q
    ||||||| ||||||||||||||||| |||||||     |||||||||||||| ||||| ||||||||    
T  18985119 caaggttttgcaactcgagagtttacctcaacttgttttgtctaggtaaacttgactcgagaactcg 18985053  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 24082977 - 24082908
Alignment:
Q  391 tcaaggttctgcaactcgagagtttatctcaactc----tgtctaggtaaactcgactcaagaactcgta 456  Q
    |||| ||| ||||||||||||||||| ||||||||    || ||||||||||||||||  ||||||||||    
T  24082977 tcaatgttttgcaactcgagagtttacctcaactcgttttgcctaggtaaactcgactagagaactcgta 24082908  T

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